Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.124-201ENST00000363339 93 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 SNORA80A-201ENST00000363922 136 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.297-201ENST00000364950 91 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 RNU6-211P-201ENST00000384047 107 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.785-201ENST00000384290 109 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 MIR29C-201ENST00000385231 88 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 RNU11-5P-201ENST00000391216 129 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 SNORD88.1-201ENST00000408684 91 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 AC016909.1-201ENST00000415916 166 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 HMGN2P34-201ENST00000437647 269 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 AL353689.1-201ENST00000438895 199 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 RPS27AP9-201ENST00000477681 438 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 AC010409.1-201ENST00000487382 476 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 RNU6-182P-201ENST00000516970 105 ntBASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.81□□□□□ -1.96
TRIM39Q9HCM9 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.29-201ENST00000362570 113 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 VTRNA1-1-201ENST00000363120 99 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 RNY4P28-201ENST00000365281 93 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 MIR512-1-201ENST00000384913 84 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.626-201ENST00000411288 95 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 OOSP1P1-201ENST00000423265 274 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 MTND5P15-201ENST00000434246 349 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 RPS29P21-201ENST00000496272 170 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 RN7SL636P-201ENST00000497504 294 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 AC011406.1-201ENST00000512440 370 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 SNORD116-28-201ENST00000516123 91 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 RNU6-1278P-201ENST00000516130 107 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 RNU6-1337P-201ENST00000516525 95 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 ELOCP29-201ENST00000588193 334 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 Z83818.1-201ENST00000603584 150 ntBASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
TRIM39Q9HCM9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 MIR340-201ENST00000362125 95 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 RNU6-899P-201ENST00000363947 107 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.262-201ENST00000364641 102 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.310-201ENST00000365063 113 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 SNORA72.4-201ENST00000384174 132 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 MIR518C-201ENST00000384822 101 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 RNU6-763P-201ENST00000390865 106 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 MIR1262-201ENST00000408276 93 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 RNU6-651P-201ENST00000411040 105 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 AC087499.2-201ENST00000432861 149 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 HSPE1P21-201ENST00000438283 308 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 SNORA81.3-201ENST00000517283 198 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 MIR4438-201ENST00000585271 93 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.15-201ENST00000611544 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.16-201ENST00000613119 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.12-201ENST00000613778 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.20-201ENST00000613956 192 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.9-201ENST00000615427 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.11-201ENST00000616345 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.2-201ENST00000616535 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.3-201ENST00000617785 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.19-201ENST00000618602 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 RNU2-1-201ENST00000618664 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.6-201ENST00000619225 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.5-201ENST00000619465 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 U2.10-201ENST00000620268 191 ntBASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.79□□□□□ -1.96
TRIM39Q9HCM9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 MIR411-201ENST00000362239 96 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 snoU2-30.2-201ENST00000362805 70 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 MIR181B1-201ENST00000385240 110 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.793-201ENST00000411222 111 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 AC060773.1-201ENST00000421698 310 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 AL109933.2-201ENST00000452651 260 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 RPL36AP21-201ENST00000490372 323 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 AL033523.1-201ENST00000605153 153 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 MIR7106-201ENST00000612419 65 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
TRIM39Q9HCM9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 RNU6-801P-201ENST00000364087 105 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 Y_RNA.274-201ENST00000364714 101 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 Y_RNA.304-201ENST00000365011 112 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 MIR181A2-201ENST00000384863 110 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 RPS20P10-201ENST00000451209 253 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 ATP5J2P3-201ENST00000451550 258 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 Y_RNA.637-201ENST00000459424 114 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms