Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
BRF1Q92994 RNU4-84P-201ENST00000364200 139 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 SNORA20B-201ENST00000384220 132 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 RNA5SP21-201ENST00000410917 96 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 AL121890.1-201ENST00000435457 205 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 AC107083.1-201ENST00000439643 279 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 AC010598.1-201ENST00000510378 103 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 RN7SKP132-201ENST00000516001 208 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.16□□□□□ -1.9
BRF1Q92994 AL033523.1-201ENST00000605153 153 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.16□□□□□ -1.9
BRF1Q92994 MIR5739-201ENST00000619803 80 ntBASIC3.16□□□□□ -1.9
BRF1Q92994 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
BRF1Q92994 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
BRF1Q92994 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.16□□□□□ -1.9
BRF1Q92994 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.15□□□□□ -1.9
BRF1Q92994 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
BRF1Q92994 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
BRF1Q92994 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
BRF1Q92994 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.15□□□□□ -1.9
BRF1Q92994 SNORA27.1-201ENST00000362604 124 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 RNU6-271P-201ENST00000363858 105 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 snoU2_19.4-201ENST00000364329 80 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 Y_RNA.293-201ENST00000364908 93 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 RNU6-144P-201ENST00000383951 107 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 AL031121.1-201ENST00000406553 254 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 MIR548I2-201ENST00000408348 149 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.15□□□□□ -1.91
BRF1Q92994 EBAG9P1-201ENST00000418955 543 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 SNORD65B-201ENST00000459126 73 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 RPL36AP21-201ENST00000490372 323 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 RNU6-948P-201ENST00000516374 107 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 MIR4744-201ENST00000581563 82 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 MIR3199-1-201ENST00000582434 88 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 MIR4635-201ENST00000583759 79 ntBASIC3.15□□□□□ -1.91
BRF1Q92994 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.15□□□□□ -1.91
BRF1Q92994 Y_RNA.124-201ENST00000363339 93 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 RNA5SP240-201ENST00000365355 128 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 Y_RNA.357-201ENST00000365487 109 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.14□□□□□ -1.91
BRF1Q92994 SEPT7P4-201ENST00000437076 306 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 AC105272.1-201ENST00000438604 198 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 CYP2C59P-201ENST00000457790 269 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.14□□□□□ -1.91
BRF1Q92994 Y_RNA.797-201ENST00000515977 94 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 AC006435.5-201ENST00000624486 112 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.14□□□□□ -1.91
BRF1Q92994 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.14□□□□□ -1.91
BRF1Q92994 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.14□□□□□ -1.91
BRF1Q92994 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.14□□□□□ -1.91
BRF1Q92994 AC080128.1-201ENST00000474389 1917 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
BRF1Q92994 RNU6-1205P-201ENST00000363625 106 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 Y_RNA.172-201ENST00000363765 102 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 RNU6-1130P-201ENST00000365434 107 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 U8.9-201ENST00000365667 134 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 RNU6-449P-201ENST00000383914 107 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 RNU6-1235P-201ENST00000384559 107 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 MIR218-1-201ENST00000384999 110 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
BRF1Q92994 RNU6-578P-201ENST00000390980 103 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 RPL23AP83-201ENST00000434984 473 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 RNU6-498P-201ENST00000459468 107 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.13□□□□□ -1.91
BRF1Q92994 AP001485.1-201ENST00000604799 199 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 AC004832.4-201ENST00000608952 331 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.13□□□□□ -1.91
BRF1Q92994 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.13□□□□□ -1.91
BRF1Q92994 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.13□□□□□ -1.91
BRF1Q92994 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
BRF1Q92994 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.12□□□□□ -1.91
BRF1Q92994 RNU4-10P-201ENST00000364383 140 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 SNORD116-18-201ENST00000383961 92 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 MIR616-201ENST00000385293 97 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 RNU6-57P-201ENST00000411348 103 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 AL161788.1-201ENST00000441805 169 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 AC025750.2-201ENST00000442609 450 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 AC090515.1-201ENST00000465295 476 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 RPS26P55-201ENST00000471178 356 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 RNU7-115P-201ENST00000516433 55 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 RNU6-1337P-201ENST00000516525 95 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 RNU2-34P-201ENST00000516534 121 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 RNU7-121P-201ENST00000516604 62 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 AC025647.1-201ENST00000517879 253 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 AC022616.8-201ENST00000533569 253 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.12□□□□□ -1.91
BRF1Q92994 MIR4431-201ENST00000579990 94 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 AL356280.1-201ENST00000603614 379 ntBASIC3.12□□□□□ -1.91
BRF1Q92994 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
BRF1Q92994 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
BRF1Q92994 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
BRF1Q92994 Y_RNA.24-201ENST00000362508 103 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 RNU6-81P-201ENST00000365608 104 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 Y_RNA.400-201ENST00000383963 111 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 SNORD14D-201ENST00000384390 87 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 RNU6-239P-201ENST00000390990 99 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 SNORA26.7-201ENST00000391288 122 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 MIR1289-1-201ENST00000408836 144 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 AL606753.1-201ENST00000427435 87 ntBASIC3.11□□□□□ -1.91
BRF1Q92994 AC016717.1-201ENST00000448918 286 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms