Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RNA5SP274-201ENST00000410484 108 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 RNA5SP229-201ENST00000410809 99 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC069257.2-201ENST00000441819 155 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 RN7SL633P-201ENST00000488974 297 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC117454.1-201ENST00000491120 168 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 SCARNA13-201ENST00000516672 275 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 MIR6810-201ENST00000622701 70 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC022513.1-201ENST00000624512 117 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC018630.2-201ENST00000534866 2403 ntBASIC2.48□□□□□ -2.01
CLRN3Q8NCR9 AC007336.1-201ENST00000576365 3828 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 RNU6-1019P-201ENST00000364424 107 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 RNU1-51P-201ENST00000365345 176 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.785-201ENST00000384290 109 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 MIR30B-201ENST00000384850 88 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AC091153.1-201ENST00000466297 402 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 SNORA31.25-201ENST00000517242 134 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AC022080.3-201ENST00000544433 482 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 MIR5688-201ENST00000580619 83 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AC093732.2-201ENST00000607950 274 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 U1.36-201ENST00000620684 176 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 AL365265.1-201ENST00000621045 234 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 U6.108-201ENST00000637764 58 ntBASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.47□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.29-201ENST00000362570 113 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 RNA5SP393-201ENST00000363423 117 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 SNORA33-201ENST00000363664 130 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 Y_RNA.274-201ENST00000364714 101 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 RNU6-136P-201ENST00000384663 107 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 SNORA36B-201ENST00000410438 131 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 CYCSP4-201ENST00000429682 331 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 MTND2P29-201ENST00000438595 412 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 RPS4XP11-201ENST00000446897 772 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 RPL23AP54-201ENST00000495129 419 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 RNU7-193P-201ENST00000516723 65 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 RNU6-1096P-201ENST00000517089 102 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 AC100767.1-201ENST00000528178 123 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 AL020997.2-201ENST00000602607 184 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 Y_RNA.802-201ENST00000614892 130 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 MIR6079-201ENST00000635807 62 ntBASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CLRN3Q8NCR9 SNORA8.3-201ENST00000384679 139 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 MIR526A2-201ENST00000390198 65 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 RNU6-907P-201ENST00000390924 102 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 MIR1193-201ENST00000408109 78 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 SNORD105B-201ENST00000458770 79 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 AC109925.1-201ENST00000478069 331 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 AL163195.1-201ENST00000496941 348 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 RNU6-341P-201ENST00000516973 96 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 MIR5094-201ENST00000578766 85 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 MIR5194-201ENST00000582634 120 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 MIR7851-201ENST00000610611 160 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 AC012442.3-202ENST00000636742 206 ntBASIC2.45□□□□□ -2.02
CLRN3Q8NCR9 AC100821.1-201ENST00000523153 2479 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 MIR367-201ENST00000362299 68 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 SNORA67.1-201ENST00000364749 141 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 SNORA48.1-201ENST00000390879 135 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 RNU6ATAC-201ENST00000408749 126 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 Y_RNA.793-201ENST00000411222 111 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 AC107083.1-201ENST00000439643 279 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 RNU6-437P-201ENST00000459408 95 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 AC091021.1-201ENST00000468051 388 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 RNU6-182P-201ENST00000516970 105 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 SNORA81.3-201ENST00000517283 198 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 MIR4724-201ENST00000579485 89 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 AC091178.2-201ENST00000584401 117 ntBASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CLRN3Q8NCR9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 MIR6073-201ENST00000352083 89 ntBASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 RNU6-653P-201ENST00000363074 106 ntBASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 RNU6-1020P-201ENST00000363684 107 ntBASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 RNU4-17P-201ENST00000365598 141 ntBASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.43□□□□□ -2.02
CLRN3Q8NCR9 AL035423.1-201ENST00000420331 213 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 158.5 ms