Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 HMGN1P12-201ENST00000499125 195 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 RNU1-142P-201ENST00000516682 145 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 RNU7-128P-201ENST00000517247 62 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 AC027419.1-201ENST00000522976 328 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 PRR13P7-201ENST00000605538 430 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.23□□□□□ -2.21
SKA3Q8IX90 AC095038.3-201ENST00000634439 195 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 U6.108-201ENST00000637764 58 ntBASIC1.23□□□□□ -2.21
SKA3Q8IX90 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SKA3Q8IX90 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SKA3Q8IX90 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
SKA3Q8IX90 ZNF209P-201ENST00000593450 2304 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 RNU6-203P-201ENST00000384038 104 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 RNU6-310P-201ENST00000384655 107 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 SNORA75.6-201ENST00000391318 127 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 Y_RNA.646-201ENST00000410980 101 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 AC015922.2-201ENST00000435593 184 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 UBE2V1P7-201ENST00000446395 340 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 RPS27P1-201ENST00000450552 247 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.22□□□□□ -2.21
SKA3Q8IX90 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.22□□□□□ -2.21
SKA3Q8IX90 RNU6-120P-201ENST00000516077 103 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 RNA5SP61-201ENST00000516453 100 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.22□□□□□ -2.21
SKA3Q8IX90 DNAJC19P9-201ENST00000555084 351 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 AC104260.1-201ENST00000616660 539 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.22□□□□□ -2.21
SKA3Q8IX90 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.22□□□□□ -2.21
SKA3Q8IX90 ZNF72P-201ENST00000425869 1908 ntBASIC1.22□□□□□ -2.21
SKA3Q8IX90 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.22□□□□□ -2.21
SKA3Q8IX90 Y_RNA.67-201ENST00000362870 100 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 RNU6-890P-201ENST00000384121 107 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 Y_RNA.474-201ENST00000384341 102 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 RPL21P1-201ENST00000399532 476 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 ELOCP21-201ENST00000412558 336 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AL161935.2-201ENST00000414627 60 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC138393.2-201ENST00000414742 246 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.21□□□□□ -2.22
SKA3Q8IX90 MRPS10P1-201ENST00000448483 130 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 MIR2053-201ENST00000459295 91 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 RPS27P22-201ENST00000478056 241 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC022493.2-201ENST00000506122 481 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.21□□□□□ -2.22
SKA3Q8IX90 RNU6-559P-201ENST00000516151 98 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC023157.2-201ENST00000540596 141 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 SUB1P3-201ENST00000564581 315 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.21□□□□□ -2.22
SKA3Q8IX90 MIR4438-201ENST00000585271 93 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC022217.4-201ENST00000604389 163 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC113139.1-201ENST00000605049 239 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 AL512598.1-201ENST00000610158 273 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 U6.73-201ENST00000619194 103 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.21□□□□□ -2.22
SKA3Q8IX90 AC091812.1-201ENST00000432235 1948 ntBASIC1.21□□□□□ -2.22
SKA3Q8IX90 Y_RNA.140-201ENST00000363474 103 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 RNU6-1145P-201ENST00000384246 107 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 RNU6-318P-201ENST00000384283 103 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AC245047.3-201ENST00000429428 127 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.2□□□□□ -2.22
SKA3Q8IX90 SNORD65B-201ENST00000459126 73 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 RNU6-625P-201ENST00000459412 107 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.2□□□□□ -2.22
SKA3Q8IX90 RN7SKP49-201ENST00000516675 260 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 RNU1-92P-201ENST00000517017 135 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AC019176.1-201ENST00000518519 225 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.2□□□□□ -2.22
SKA3Q8IX90 AL161670.1-201ENST00000554348 137 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.2□□□□□ -2.22
SKA3Q8IX90 MIR4422-201ENST00000581938 83 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AC005730.3-201ENST00000583067 366 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 MIR4769-201ENST00000584126 77 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AL929325.1-201ENST00000603096 117 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AL355073.2-201ENST00000612106 557 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 AC073544.1-201ENST00000600110 1595 ntBASIC1.2□□□□□ -2.22
SKA3Q8IX90 MIR302D-201ENST00000362275 68 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 RNU6-1301P-201ENST00000362724 104 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 RNU6-271P-201ENST00000363858 105 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 SNORD26-201ENST00000384147 75 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 AC010154.1-201ENST00000425857 269 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.19□□□□□ -2.22
SKA3Q8IX90 RAB28P5-201ENST00000427490 651 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 Y_RNA.653-201ENST00000459091 95 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 RNU7-95P-201ENST00000459222 64 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 RPS26P55-201ENST00000471178 356 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.19□□□□□ -2.22
SKA3Q8IX90 AC010469.2-201ENST00000496412 480 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 AC074133.1-201ENST00000515696 183 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 SNORA40.9-201ENST00000515895 93 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 RNU6-264P-201ENST00000517134 104 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 CYCSP23-201ENST00000519781 313 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.19□□□□□ -2.22
SKA3Q8IX90 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.19□□□□□ -2.22
SKA3Q8IX90 AC018448.1-201ENST00000552843 316 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 MIR5690-201ENST00000583739 73 ntBASIC1.19□□□□□ -2.22
SKA3Q8IX90 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 182.1 ms