Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 U2.12-201ENST00000613778 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.20-201ENST00000613956 192 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.9-201ENST00000615427 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.11-201ENST00000616345 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.2-201ENST00000616535 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.3-201ENST00000617785 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.19-201ENST00000618602 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 RNU2-1-201ENST00000618664 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.6-201ENST00000619225 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.5-201ENST00000619465 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.10-201ENST00000620268 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U1.36-201ENST00000620684 176 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 RNA5SP325-201ENST00000363756 130 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RNA5SP138-201ENST00000365098 114 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RNU6-1240P-201ENST00000365155 104 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RNU6-1310P-201ENST00000384153 107 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RNU6-308P-201ENST00000390957 107 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 AL355497.1-201ENST00000406262 551 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RNU2-40P-201ENST00000410833 196 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 AC016909.1-201ENST00000415916 166 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RAB28P5-201ENST00000427490 651 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 AC005534.2-201ENST00000431047 433 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 RNU6-717P-201ENST00000459076 104 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 SNORD13-201ENST00000459299 104 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2□□□□□ -2.09
COL28A1Q2UY09 RNU6-1146P-201ENST00000516282 102 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 HSBP1P1-201ENST00000555205 166 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 MIR3171-201ENST00000584270 74 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 MIR4448-201ENST00000584360 86 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 AL121655.1-201ENST00000605811 308 ntBASIC2□□□□□ -2.09
COL28A1Q2UY09 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2□□□□□ -2.09
COL28A1Q2UY09 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
COL28A1Q2UY09 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNU6-661P-201ENST00000362409 107 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNU4-50P-201ENST00000364361 141 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNA5SP190-201ENST00000365222 118 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 SNORA6-201ENST00000384033 151 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNU6-708P-201ENST00000384217 107 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AL117342.1-201ENST00000404861 406 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNU2-2P-201ENST00000410396 191 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AP1B1P2-201ENST00000416196 106 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AC010469.2-201ENST00000496412 480 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNA5SP200-201ENST00000516360 103 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 SCARNA16.3-201ENST00000516595 184 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNU6-107P-201ENST00000516643 102 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AP005660.1-201ENST00000522972 293 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.99□□□□□ -2.09
COL28A1Q2UY09 MIR4659A-201ENST00000580269 81 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RPS29P30-201ENST00000600975 111 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AL109918.3-201ENST00000603072 338 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 BX248123.2-201ENST00000606318 124 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 AC240442.1-201ENST00000616055 283 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 MIR3674-201ENST00000636576 68 ntBASIC1.99□□□□□ -2.09
COL28A1Q2UY09 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.99□□□□□ -2.09
COL28A1Q2UY09 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL28A1Q2UY09 RNU6-1266P-201ENST00000362794 105 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 snoU2-30.2-201ENST00000362805 70 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 SNORD14.1-201ENST00000365609 90 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 SNORA22B-201ENST00000383876 138 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.485-201ENST00000384395 102 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AL512604.1-201ENST00000404812 257 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 U3.40-201ENST00000408706 208 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 RNU4-62P-201ENST00000410125 130 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 RNA5SP501-201ENST00000410990 112 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AC096920.1-201ENST00000423991 241 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 CST2P1-201ENST00000425770 87 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 MTND1P14-201ENST00000427400 950 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AC022616.4-201ENST00000522985 181 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AC110588.1-201ENST00000559699 137 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AC022432.1-201ENST00000595739 310 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AL390123.1-201ENST00000603216 237 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 AC006435.5-201ENST00000624486 112 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 MIR338-201ENST00000636369 67 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.98□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.202-201ENST00000364083 110 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.230-201ENST00000364348 109 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 SNORA63.7-201ENST00000365579 123 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 MIR515-2-201ENST00000384883 83 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 MIR515-1-201ENST00000384884 83 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 MIR613-201ENST00000385248 95 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 SNORA48.3-201ENST00000391081 134 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 MRPL42P3-201ENST00000401492 326 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 RNA5SP475-201ENST00000410568 110 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 AL158823.1-201ENST00000418441 478 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 HMGN2P34-201ENST00000437647 269 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 SUMO1P2-201ENST00000452524 304 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 RPL23AP3-201ENST00000453844 468 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 RNU6-408P-201ENST00000515910 100 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 RNA5SP182-201ENST00000516064 82 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 RNA5SP364-201ENST00000516938 78 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.713-201ENST00000517013 96 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.721-201ENST00000517207 102 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 AC040926.1-201ENST00000530195 238 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms