Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.8□□□□□ -2.12
PDX1P52945 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.8□□□□□ -2.12
PDX1P52945 AC055872.1-201ENST00000570978 278 ntBASIC1.8□□□□□ -2.12
PDX1P52945 AC005786.1-201ENST00000588553 154 ntBASIC1.8□□□□□ -2.12
PDX1P52945 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.8□□□□□ -2.12
PDX1P52945 AC084768.2-201ENST00000622736 221 ntBASIC1.8□□□□□ -2.12
PDX1P52945 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.8□□□□□ -2.12
PDX1P52945 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
PDX1P52945 RNU6-862P-201ENST00000362804 105 ntBASIC1.79□□□□□ -2.12
PDX1P52945 RNU6-1264P-201ENST00000383891 107 ntBASIC1.79□□□□□ -2.12
PDX1P52945 SNORA48.1-201ENST00000390879 135 ntBASIC1.79□□□□□ -2.12
PDX1P52945 SNORD78.2-201ENST00000391076 69 ntBASIC1.79□□□□□ -2.12
PDX1P52945 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
PDX1P52945 MIR548P-201ENST00000408336 84 ntBASIC1.79□□□□□ -2.12
PDX1P52945 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.79□□□□□ -2.12
PDX1P52945 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.79□□□□□ -2.12
PDX1P52945 MTND1P14-201ENST00000427400 950 ntBASIC1.79□□□□□ -2.12
PDX1P52945 TOMM22P2-201ENST00000430735 237 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AL160004.2-201ENST00000432935 350 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AC112492.4-201ENST00000456549 352 ntBASIC1.79□□□□□ -2.12
PDX1P52945 Y_RNA.631-201ENST00000459607 101 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AC108729.3-201ENST00000513484 108 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AC074133.1-201ENST00000515696 183 ntBASIC1.79□□□□□ -2.12
PDX1P52945 Y_RNA.701-201ENST00000516812 110 ntBASIC1.79□□□□□ -2.12
PDX1P52945 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
PDX1P52945 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.79□□□□□ -2.12
PDX1P52945 AC020661.2-201ENST00000560114 134 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AL353149.1-201ENST00000610667 244 ntBASIC1.79□□□□□ -2.12
PDX1P52945 uc_338.20-201ENST00000621563 178 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AC022140.2-201ENST00000623500 188 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AC245060.5-201ENST00000610778 3293 ntBASIC1.79□□□□□ -2.12
PDX1P52945 AC091812.1-201ENST00000432235 1948 ntBASIC1.78□□□□□ -2.12
PDX1P52945 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
PDX1P52945 Y_RNA.27-201ENST00000362540 103 ntBASIC1.78□□□□□ -2.12
PDX1P52945 snoU2-30.2-201ENST00000362805 70 ntBASIC1.78□□□□□ -2.12
PDX1P52945 MIR17-201ENST00000385012 84 ntBASIC1.78□□□□□ -2.12
PDX1P52945 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.78□□□□□ -2.12
PDX1P52945 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.78□□□□□ -2.12
PDX1P52945 FCF1P4-201ENST00000448326 183 ntBASIC1.78□□□□□ -2.12
PDX1P52945 RPL23AP3-201ENST00000453844 468 ntBASIC1.78□□□□□ -2.12
PDX1P52945 RNU6-408P-201ENST00000515910 100 ntBASIC1.78□□□□□ -2.12
PDX1P52945 RNU6-1053P-201ENST00000515930 101 ntBASIC1.78□□□□□ -2.12
PDX1P52945 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.78□□□□□ -2.12
PDX1P52945 Y_RNA.711-201ENST00000516993 102 ntBASIC1.78□□□□□ -2.12
PDX1P52945 MIR5094-201ENST00000578766 85 ntBASIC1.78□□□□□ -2.12
PDX1P52945 MIR3935-201ENST00000583472 104 ntBASIC1.78□□□□□ -2.12
PDX1P52945 snoU13.31-201ENST00000607291 104 ntBASIC1.78□□□□□ -2.12
PDX1P52945 AC134503.1-201ENST00000633048 54 ntBASIC1.78□□□□□ -2.12
PDX1P52945 MIR338-201ENST00000636369 67 ntBASIC1.78□□□□□ -2.12
PDX1P52945 RNU6-661P-201ENST00000362409 107 ntBASIC1.77□□□□□ -2.13
PDX1P52945 RNU6-454P-201ENST00000364292 107 ntBASIC1.77□□□□□ -2.13
PDX1P52945 Y_RNA.287-201ENST00000364853 94 ntBASIC1.77□□□□□ -2.13
PDX1P52945 SNORA22B-201ENST00000383876 138 ntBASIC1.77□□□□□ -2.13
PDX1P52945 RNU2-40P-201ENST00000410833 196 ntBASIC1.77□□□□□ -2.13
PDX1P52945 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.77□□□□□ -2.13
PDX1P52945 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.77□□□□□ -2.13
PDX1P52945 SNORA40.14-201ENST00000516543 86 ntBASIC1.77□□□□□ -2.13
PDX1P52945 RNA5SP364-201ENST00000516938 78 ntBASIC1.77□□□□□ -2.13
PDX1P52945 CYCSP23-201ENST00000519781 313 ntBASIC1.77□□□□□ -2.13
PDX1P52945 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.77□□□□□ -2.13
PDX1P52945 HSBP1P1-201ENST00000555205 166 ntBASIC1.77□□□□□ -2.13
PDX1P52945 MIR4659A-201ENST00000580269 81 ntBASIC1.77□□□□□ -2.13
PDX1P52945 MIR3171-201ENST00000584270 74 ntBASIC1.77□□□□□ -2.13
PDX1P52945 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PDX1P52945 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.76□□□□□ -2.13
PDX1P52945 MIR410-201ENST00000362222 80 ntBASIC1.76□□□□□ -2.13
PDX1P52945 Y_RNA.128-201ENST00000363391 112 ntBASIC1.76□□□□□ -2.13
PDX1P52945 Y_RNA.498-201ENST00000384460 102 ntBASIC1.76□□□□□ -2.13
PDX1P52945 RNU6-417P-201ENST00000384712 107 ntBASIC1.76□□□□□ -2.13
PDX1P52945 Y_RNA.645-201ENST00000391229 102 ntBASIC1.76□□□□□ -2.13
PDX1P52945 MTCYBP6-201ENST00000441810 138 ntBASIC1.76□□□□□ -2.13
PDX1P52945 RNU6-250P-201ENST00000516958 103 ntBASIC1.76□□□□□ -2.13
PDX1P52945 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.76□□□□□ -2.13
PDX1P52945 MIR4287-201ENST00000579398 78 ntBASIC1.76□□□□□ -2.13
PDX1P52945 AC078899.2-201ENST00000595282 212 ntBASIC1.76□□□□□ -2.13
PDX1P52945 MIR8081-201ENST00000611533 95 ntBASIC1.76□□□□□ -2.13
PDX1P52945 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.76□□□□□ -2.13
PDX1P52945 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.76□□□□□ -2.13
PDX1P52945 AL138825.1-201ENST00000618587 192 ntBASIC1.76□□□□□ -2.13
PDX1P52945 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.76□□□□□ -2.13
PDX1P52945 AC005592.1-201ENST00000566527 1640 ntBASIC1.76□□□□□ -2.13
PDX1P52945 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PDX1P52945 Y_RNA.11-201ENST00000362375 109 ntBASIC1.75□□□□□ -2.13
PDX1P52945 Y_RNA.28-201ENST00000362554 111 ntBASIC1.75□□□□□ -2.13
PDX1P52945 RNU1-96P-201ENST00000364163 162 ntBASIC1.75□□□□□ -2.13
PDX1P52945 SNORA8-201ENST00000384574 139 ntBASIC1.75□□□□□ -2.13
PDX1P52945 MRPL35P1-201ENST00000404272 572 ntBASIC1.75□□□□□ -2.13
PDX1P52945 AL512604.1-201ENST00000404812 257 ntBASIC1.75□□□□□ -2.13
PDX1P52945 SUMO2P12-201ENST00000405924 140 ntBASIC1.75□□□□□ -2.13
PDX1P52945 RNA5SP100-201ENST00000410903 110 ntBASIC1.75□□□□□ -2.13
PDX1P52945 RNA5SP59-201ENST00000410922 110 ntBASIC1.75□□□□□ -2.13
PDX1P52945 AC008134.1-201ENST00000420943 193 ntBASIC1.75□□□□□ -2.13
PDX1P52945 SDAD1P3-201ENST00000427380 333 ntBASIC1.75□□□□□ -2.13
PDX1P52945 AC245047.4-201ENST00000433189 144 ntBASIC1.75□□□□□ -2.13
PDX1P52945 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.75□□□□□ -2.13
PDX1P52945 RNU6-966P-201ENST00000516479 104 ntBASIC1.75□□□□□ -2.13
PDX1P52945 SNORA25.15-201ENST00000516487 89 ntBASIC1.75□□□□□ -2.13
PDX1P52945 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.75□□□□□ -2.13
PDX1P52945 AC023442.1-201ENST00000531247 422 ntBASIC1.75□□□□□ -2.13
PDX1P52945 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms