Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNU6-322P-201ENST00000516010 103 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 SNORA19.2-201ENST00000516013 114 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 RNU6-1038P-201ENST00000516516 104 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 RNU1-117P-201ENST00000517041 158 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.56□□□□□ -2.32
COL18A1P39060 AC136628.3-201ENST00000521868 290 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 MTATP6P24-201ENST00000576835 677 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC073349.3-201ENST00000617616 186 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC106754.2-201ENST00000623006 233 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 RNU6-199P-201ENST00000362954 107 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 RNU6-1322P-201ENST00000364309 107 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 RNU6-348P-201ENST00000384386 107 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 SNORA80D-201ENST00000384488 135 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 MIR32-201ENST00000384965 70 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 MIR660-201ENST00000385235 97 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 MIR450B-201ENST00000401182 78 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 AC016909.1-201ENST00000415916 166 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 RPL39P39-201ENST00000455840 151 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 RNU6-261P-201ENST00000459506 102 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.55□□□□□ -2.32
COL18A1P39060 RN7SKP298-201ENST00000515950 94 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 SNORD79.1-201ENST00000516069 84 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 RNU6-1332P-201ENST00000516666 104 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.55□□□□□ -2.32
COL18A1P39060 AL357312.1-201ENST00000603879 298 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 AC008873.1-201ENST00000625051 138 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 Y_RNA.136-201ENST00000363444 102 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 AL451046.2-201ENST00000403074 277 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.55□□□□□ -2.32
COL18A1P39060 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.55□□□□□ -2.32
COL18A1P39060 MRPS10P2-201ENST00000431226 381 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 MTCO2P16-201ENST00000436962 677 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 AC005002.2-201ENST00000438228 269 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.55□□□□□ -2.32
COL18A1P39060 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.55□□□□□ -2.32
COL18A1P39060 RNU6-58P-201ENST00000517143 103 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 MTND1P5-201ENST00000517906 940 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.55□□□□□ -2.32
COL18A1P39060 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.55□□□□□ -2.32
COL18A1P39060 AL133215.3-201ENST00000609801 448 ntBASIC0.55□□□□□ -2.32
COL18A1P39060 SNORA2.2-201ENST00000365473 135 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 AC114482.1-201ENST00000418010 247 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 SNORD65B-201ENST00000459126 73 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 TRBVB-201ENST00000477100 408 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 RNA5SP168-201ENST00000516642 112 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 RNU6-922P-201ENST00000516753 99 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 AP003327.1-201ENST00000529684 127 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.54□□□□□ -2.32
COL18A1P39060 MIR5695-201ENST00000579717 85 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 AL158063.1-201ENST00000615349 536 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 AC068137.4-201ENST00000638485 296 ntBASIC0.54□□□□□ -2.32
COL18A1P39060 RNU4-9P-201ENST00000364951 139 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 RNU6-505P-201ENST00000384427 107 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 MIR562-201ENST00000384894 95 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AL353193.1-201ENST00000421444 268 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.53□□□□□ -2.32
COL18A1P39060 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.53□□□□□ -2.32
COL18A1P39060 RNU7-28P-201ENST00000516759 62 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AC090142.3-201ENST00000519012 385 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AC104383.1-201ENST00000530297 370 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AC092807.2-201ENST00000609367 243 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AC073114.1-201ENST00000612027 490 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 AC006435.5-201ENST00000624486 112 ntBASIC0.53□□□□□ -2.32
COL18A1P39060 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
COL18A1P39060 SNORD115-32-201ENST00000364079 82 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 Y_RNA.381-201ENST00000365666 102 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
COL18A1P39060 SNORA2A-201ENST00000383885 135 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 RNU6-790P-201ENST00000384479 105 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 MIR153-2-201ENST00000385225 87 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 RNU6-733P-201ENST00000410759 104 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 PCMTD1P1-201ENST00000455560 355 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 RNU6-1208P-201ENST00000459588 107 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 SNORA40.12-201ENST00000516329 111 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.52□□□□□ -2.33
COL18A1P39060 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.52□□□□□ -2.33
COL18A1P39060 AL121579.1-201ENST00000555129 305 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 RPL21P9-201ENST00000556149 474 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.52□□□□□ -2.33
COL18A1P39060 AC145350.1-201ENST00000567426 208 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.52□□□□□ -2.33
COL18A1P39060 AC008088.1-201ENST00000580993 280 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AC023510.2-201ENST00000622162 746 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
COL18A1P39060 Y_RNA.124-201ENST00000363339 93 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 RNU4-67P-201ENST00000364569 141 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 Y_RNA.265-201ENST00000364677 108 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 Y_RNA.549-201ENST00000384657 102 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AL022718.1-201ENST00000412004 84 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 MTCO3P18-201ENST00000440206 761 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.52□□□□□ -2.33
COL18A1P39060 LINC01399-202ENST00000458450 244 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 PSMC1P5-201ENST00000512850 177 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 Y_RNA.695-201ENST00000516715 107 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AL118558.2-201ENST00000556294 238 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.52□□□□□ -2.33
COL18A1P39060 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.52□□□□□ -2.33
COL18A1P39060 SNORA69-201ENST00000383895 132 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms