Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNORA59A-201ENST00000459326 152 ntBASIC2.77□□□□□ -1.97
MSX2P35548 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.77□□□□□ -1.97
MSX2P35548 RNU6-1007P-201ENST00000516586 107 ntBASIC2.77□□□□□ -1.97
MSX2P35548 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.77□□□□□ -1.97
MSX2P35548 AL670379.2-201ENST00000604983 252 ntBASIC2.77□□□□□ -1.97
MSX2P35548 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSX2P35548 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSX2P35548 AC080128.1-201ENST00000474389 1917 ntBASIC2.77□□□□□ -1.97
MSX2P35548 AC010332.2-201ENST00000613083 1904 ntBASIC2.77□□□□□ -1.97
MSX2P35548 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
MSX2P35548 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.76□□□□□ -1.97
MSX2P35548 MIR22-201ENST00000362190 85 ntBASIC2.76□□□□□ -1.97
MSX2P35548 Y_RNA.229-201ENST00000364347 113 ntBASIC2.76□□□□□ -1.97
MSX2P35548 U8.7-201ENST00000364940 136 ntBASIC2.76□□□□□ -1.97
MSX2P35548 MT-TT-201ENST00000387460 66 ntBASIC2.76□□□□□ -1.97
MSX2P35548 MIR873-201ENST00000401120 77 ntBASIC2.76□□□□□ -1.97
MSX2P35548 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.76□□□□□ -1.97
MSX2P35548 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.76□□□□□ -1.97
MSX2P35548 RN7SL297P-201ENST00000483161 293 ntBASIC2.76□□□□□ -1.97
MSX2P35548 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.76□□□□□ -1.97
MSX2P35548 MIR449C-201ENST00000516047 92 ntBASIC2.76□□□□□ -1.97
MSX2P35548 RNU5F-4P-201ENST00000516581 114 ntBASIC2.76□□□□□ -1.97
MSX2P35548 AC107016.2-201ENST00000547968 190 ntBASIC2.76□□□□□ -1.97
MSX2P35548 MIR3117-201ENST00000584034 78 ntBASIC2.76□□□□□ -1.97
MSX2P35548 MIR7157-201ENST00000635801 60 ntBASIC2.76□□□□□ -1.97
MSX2P35548 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.76□□□□□ -1.97
MSX2P35548 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
MSX2P35548 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
MSX2P35548 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.75□□□□□ -1.97
MSX2P35548 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MSX2P35548 RNU1-72P-201ENST00000362976 153 ntBASIC2.75□□□□□ -1.97
MSX2P35548 RNU6-944P-201ENST00000364023 107 ntBASIC2.75□□□□□ -1.97
MSX2P35548 RNU6-144P-201ENST00000383951 107 ntBASIC2.75□□□□□ -1.97
MSX2P35548 RNU6-376P-201ENST00000384731 106 ntBASIC2.75□□□□□ -1.97
MSX2P35548 MIR1283-1-201ENST00000408494 87 ntBASIC2.75□□□□□ -1.97
MSX2P35548 RNA5SP120-201ENST00000410900 112 ntBASIC2.75□□□□□ -1.97
MSX2P35548 RNA5SP492-201ENST00000411330 114 ntBASIC2.75□□□□□ -1.97
MSX2P35548 AC092427.1-202ENST00000430569 476 ntBASIC2.75□□□□□ -1.97
MSX2P35548 AL121890.1-201ENST00000435457 205 ntBASIC2.75□□□□□ -1.97
MSX2P35548 RPL39P40-201ENST00000445481 146 ntBASIC2.75□□□□□ -1.97
MSX2P35548 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.75□□□□□ -1.97
MSX2P35548 RNA5SP112-201ENST00000515937 99 ntBASIC2.75□□□□□ -1.97
MSX2P35548 SNORA25.12-201ENST00000516202 82 ntBASIC2.75□□□□□ -1.97
MSX2P35548 SCARNA3-201ENST00000517097 143 ntBASIC2.75□□□□□ -1.97
MSX2P35548 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.75□□□□□ -1.97
MSX2P35548 AC090115.4-201ENST00000609970 188 ntBASIC2.75□□□□□ -1.97
MSX2P35548 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MSX2P35548 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.75□□□□□ -1.97
MSX2P35548 AL159152.1-201ENST00000635019 2587 ntBASIC2.75□□□□□ -1.97
MSX2P35548 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
MSX2P35548 RNU6-486P-201ENST00000363116 107 ntBASIC2.74□□□□□ -1.97
MSX2P35548 SNORA38.1-201ENST00000364172 131 ntBASIC2.74□□□□□ -1.97
MSX2P35548 RNU1-33P-201ENST00000364249 162 ntBASIC2.74□□□□□ -1.97
MSX2P35548 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
MSX2P35548 SNORA20B-201ENST00000384220 132 ntBASIC2.74□□□□□ -1.97
MSX2P35548 SNORD116-13-201ENST00000384408 92 ntBASIC2.74□□□□□ -1.97
MSX2P35548 RNU6-1274P-201ENST00000384557 107 ntBASIC2.74□□□□□ -1.97
MSX2P35548 MIR512-1-201ENST00000384913 84 ntBASIC2.74□□□□□ -1.97
MSX2P35548 MIR128-1-201ENST00000384921 82 ntBASIC2.74□□□□□ -1.97
MSX2P35548 MIR300-201ENST00000401138 83 ntBASIC2.74□□□□□ -1.97
MSX2P35548 MTND4LP9-201ENST00000427694 174 ntBASIC2.74□□□□□ -1.97
MSX2P35548 HSPE1P13-201ENST00000451143 297 ntBASIC2.74□□□□□ -1.97
MSX2P35548 RNU7-57P-201ENST00000459540 60 ntBASIC2.74□□□□□ -1.97
MSX2P35548 ATP5EP1-201ENST00000510257 156 ntBASIC2.74□□□□□ -1.97
MSX2P35548 RNU6-561P-201ENST00000516222 102 ntBASIC2.74□□□□□ -1.97
MSX2P35548 RNU7-115P-201ENST00000516433 55 ntBASIC2.74□□□□□ -1.97
MSX2P35548 RNU6-1337P-201ENST00000516525 95 ntBASIC2.74□□□□□ -1.97
MSX2P35548 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.74□□□□□ -1.97
MSX2P35548 MIR4724-201ENST00000579485 89 ntBASIC2.74□□□□□ -1.97
MSX2P35548 MIR3616-201ENST00000584070 92 ntBASIC2.74□□□□□ -1.97
MSX2P35548 AL356280.1-201ENST00000603614 379 ntBASIC2.74□□□□□ -1.97
MSX2P35548 MIR548AY-201ENST00000617669 107 ntBASIC2.74□□□□□ -1.97
MSX2P35548 AC090517.3-201ENST00000625170 141 ntBASIC2.74□□□□□ -1.97
MSX2P35548 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
MSX2P35548 SNORA27.1-201ENST00000362604 124 ntBASIC2.73□□□□□ -1.97
MSX2P35548 Y_RNA.337-201ENST00000365312 102 ntBASIC2.73□□□□□ -1.97
MSX2P35548 MIR218-1-201ENST00000384999 110 ntBASIC2.73□□□□□ -1.97
MSX2P35548 MIR15B-201ENST00000385045 98 ntBASIC2.73□□□□□ -1.97
MSX2P35548 SNORA40-201ENST00000388090 126 ntBASIC2.73□□□□□ -1.97
MSX2P35548 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.73□□□□□ -1.97
MSX2P35548 RNU6-383P-201ENST00000410864 94 ntBASIC2.73□□□□□ -1.97
MSX2P35548 RPL30P13-201ENST00000418873 348 ntBASIC2.73□□□□□ -1.97
MSX2P35548 AL445687.1-201ENST00000439946 251 ntBASIC2.73□□□□□ -1.97
MSX2P35548 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.73□□□□□ -1.97
MSX2P35548 AC074290.1-201ENST00000448883 135 ntBASIC2.73□□□□□ -1.97
MSX2P35548 AL137159.1-201ENST00000452808 512 ntBASIC2.73□□□□□ -1.97
MSX2P35548 RNU7-197P-201ENST00000458836 62 ntBASIC2.73□□□□□ -1.97
MSX2P35548 RNU7-14P-201ENST00000459331 62 ntBASIC2.73□□□□□ -1.97
MSX2P35548 RN7SL807P-201ENST00000470923 297 ntBASIC2.73□□□□□ -1.97
MSX2P35548 AC117454.1-201ENST00000491120 168 ntBASIC2.73□□□□□ -1.97
MSX2P35548 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.73□□□□□ -1.97
MSX2P35548 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.73□□□□□ -1.97
MSX2P35548 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
MSX2P35548 MIR3199-1-201ENST00000582434 88 ntBASIC2.73□□□□□ -1.97
MSX2P35548 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.73□□□□□ -1.97
MSX2P35548 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.73□□□□□ -1.97
MSX2P35548 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.73□□□□□ -1.97
MSX2P35548 SCARNA15.3-201ENST00000626315 122 ntBASIC2.73□□□□□ -1.97
MSX2P35548 SCARNA4.1-201ENST00000628597 123 ntBASIC2.73□□□□□ -1.97
MSX2P35548 MIR622-201ENST00000638396 96 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms