Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.92□□□□□ -2.1
MSH3P20585 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
MSH3P20585 Y_RNA.183-201ENST00000363882 113 ntBASIC1.91□□□□□ -2.1
MSH3P20585 Y_RNA.214-201ENST00000364201 112 ntBASIC1.91□□□□□ -2.1
MSH3P20585 Y_RNA.276-201ENST00000364732 109 ntBASIC1.91□□□□□ -2.1
MSH3P20585 RNU6-20P-201ENST00000384106 107 ntBASIC1.91□□□□□ -2.1
MSH3P20585 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
MSH3P20585 MIR1185-2-201ENST00000408687 86 ntBASIC1.91□□□□□ -2.1
MSH3P20585 AC074290.1-201ENST00000448883 135 ntBASIC1.91□□□□□ -2.1
MSH3P20585 AC016717.1-201ENST00000448918 286 ntBASIC1.91□□□□□ -2.1
MSH3P20585 RNU6-397P-201ENST00000516226 104 ntBASIC1.91□□□□□ -2.1
MSH3P20585 RNU2-34P-201ENST00000516534 121 ntBASIC1.91□□□□□ -2.1
MSH3P20585 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.91□□□□□ -2.1
MSH3P20585 MIR4423-201ENST00000580922 80 ntBASIC1.91□□□□□ -2.1
MSH3P20585 AL109918.3-201ENST00000603072 338 ntBASIC1.91□□□□□ -2.1
MSH3P20585 SNRPGP19-201ENST00000603826 189 ntBASIC1.91□□□□□ -2.1
MSH3P20585 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.91□□□□□ -2.1
MSH3P20585 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.91□□□□□ -2.1
MSH3P20585 MIR3674-201ENST00000636576 68 ntBASIC1.91□□□□□ -2.1
MSH3P20585 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
MSH3P20585 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
MSH3P20585 Y_RNA.152-201ENST00000363578 100 ntBASIC1.9□□□□□ -2.11
MSH3P20585 Y_RNA.210-201ENST00000364161 110 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RNU6-1164P-201ENST00000364428 107 ntBASIC1.9□□□□□ -2.11
MSH3P20585 Y_RNA.459-201ENST00000384251 102 ntBASIC1.9□□□□□ -2.11
MSH3P20585 Y_RNA.462-201ENST00000384268 102 ntBASIC1.9□□□□□ -2.11
MSH3P20585 SNORD14D-201ENST00000384390 87 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RNU6-1235P-201ENST00000384559 107 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RPL21P1-201ENST00000399532 476 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RNU2-20P-201ENST00000410425 191 ntBASIC1.9□□□□□ -2.11
MSH3P20585 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.9□□□□□ -2.11
MSH3P20585 ELOCP20-201ENST00000422460 345 ntBASIC1.9□□□□□ -2.11
MSH3P20585 AL445685.2-201ENST00000422551 342 ntBASIC1.9□□□□□ -2.11
MSH3P20585 AC139712.2-201ENST00000424302 339 ntBASIC1.9□□□□□ -2.11
MSH3P20585 TOMM22P2-201ENST00000430735 237 ntBASIC1.9□□□□□ -2.11
MSH3P20585 AC005002.2-201ENST00000438228 269 ntBASIC1.9□□□□□ -2.11
MSH3P20585 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.9□□□□□ -2.11
MSH3P20585 AL357134.1-201ENST00000445848 426 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RNU6-498P-201ENST00000459468 107 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RN7SL274P-201ENST00000492268 272 ntBASIC1.9□□□□□ -2.11
MSH3P20585 MRPS35P2-201ENST00000508242 191 ntBASIC1.9□□□□□ -2.11
MSH3P20585 RNU6-1046P-201ENST00000516538 107 ntBASIC1.9□□□□□ -2.11
MSH3P20585 AC005034.5-201ENST00000604219 466 ntBASIC1.9□□□□□ -2.11
MSH3P20585 snoZ196.1-201ENST00000625269 89 ntBASIC1.9□□□□□ -2.11
MSH3P20585 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.9□□□□□ -2.11
MSH3P20585 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.9□□□□□ -2.11
MSH3P20585 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.9□□□□□ -2.11
MSH3P20585 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.11
MSH3P20585 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
MSH3P20585 Y_RNA.143-201ENST00000363520 106 ntBASIC1.89□□□□□ -2.11
MSH3P20585 RNU6-770P-201ENST00000363929 105 ntBASIC1.89□□□□□ -2.11
MSH3P20585 Y_RNA.230-201ENST00000364348 109 ntBASIC1.89□□□□□ -2.11
MSH3P20585 SNORD114-6-201ENST00000364393 72 ntBASIC1.89□□□□□ -2.11
MSH3P20585 RNU6-1310P-201ENST00000384153 107 ntBASIC1.89□□□□□ -2.11
MSH3P20585 SNORD63-201ENST00000384262 68 ntBASIC1.89□□□□□ -2.11
MSH3P20585 MIR548F4-201ENST00000408515 105 ntBASIC1.89□□□□□ -2.11
MSH3P20585 MIR1261-201ENST00000408659 82 ntBASIC1.89□□□□□ -2.11
MSH3P20585 RNA5SP475-201ENST00000410568 110 ntBASIC1.89□□□□□ -2.11
MSH3P20585 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH3P20585 AL358176.2-201ENST00000425769 204 ntBASIC1.89□□□□□ -2.11
MSH3P20585 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH3P20585 AC245102.2-201ENST00000448956 180 ntBASIC1.89□□□□□ -2.11
MSH3P20585 RNU6-221P-201ENST00000459541 99 ntBASIC1.89□□□□□ -2.11
MSH3P20585 MTATP8P1-201ENST00000467115 207 ntBASIC1.89□□□□□ -2.11
MSH3P20585 AC136932.1-201ENST00000574771 208 ntBASIC1.89□□□□□ -2.11
MSH3P20585 AC005176.2-201ENST00000596933 147 ntBASIC1.89□□□□□ -2.11
MSH3P20585 AL096840.1-201ENST00000603287 93 ntBASIC1.89□□□□□ -2.11
MSH3P20585 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.89□□□□□ -2.11
MSH3P20585 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
MSH3P20585 LINC02555-201ENST00000563933 1951 ntBASIC1.89□□□□□ -2.11
MSH3P20585 RNU6-454P-201ENST00000364292 107 ntBASIC1.88□□□□□ -2.11
MSH3P20585 MIR518A2-201ENST00000384966 87 ntBASIC1.88□□□□□ -2.11
MSH3P20585 RNU6-1109P-201ENST00000391187 107 ntBASIC1.88□□□□□ -2.11
MSH3P20585 RNU5A-5P-201ENST00000411054 116 ntBASIC1.88□□□□□ -2.11
MSH3P20585 RNU6-57P-201ENST00000411348 103 ntBASIC1.88□□□□□ -2.11
MSH3P20585 RNU1-131P-201ENST00000458943 161 ntBASIC1.88□□□□□ -2.11
MSH3P20585 UBL5P3-201ENST00000475112 231 ntBASIC1.88□□□□□ -2.11
MSH3P20585 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.88□□□□□ -2.11
MSH3P20585 RNU6-856P-201ENST00000516959 98 ntBASIC1.88□□□□□ -2.11
MSH3P20585 AL117187.1-201ENST00000555482 181 ntBASIC1.88□□□□□ -2.11
MSH3P20585 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.88□□□□□ -2.11
MSH3P20585 PRR13P7-201ENST00000605538 430 ntBASIC1.88□□□□□ -2.11
MSH3P20585 AL627230.6-201ENST00000611129 280 ntBASIC1.88□□□□□ -2.11
MSH3P20585 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.88□□□□□ -2.11
MSH3P20585 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.88□□□□□ -2.11
MSH3P20585 AC004467.1-201ENST00000615678 330 ntBASIC1.88□□□□□ -2.11
MSH3P20585 AC008555.8-201ENST00000623602 2168 ntBASIC1.88□□□□□ -2.11
MSH3P20585 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
MSH3P20585 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
MSH3P20585 Y_RNA.101-201ENST00000363154 102 ntBASIC1.87□□□□□ -2.11
MSH3P20585 Y_RNA.105-201ENST00000363182 111 ntBASIC1.87□□□□□ -2.11
MSH3P20585 RNU6-937P-201ENST00000384325 106 ntBASIC1.87□□□□□ -2.11
MSH3P20585 RNU6-160P-201ENST00000384591 107 ntBASIC1.87□□□□□ -2.11
MSH3P20585 Y_RNA.570-201ENST00000384750 101 ntBASIC1.87□□□□□ -2.11
MSH3P20585 RNU6-1105P-201ENST00000384774 107 ntBASIC1.87□□□□□ -2.11
MSH3P20585 RNU6-121P-201ENST00000410525 99 ntBASIC1.87□□□□□ -2.11
MSH3P20585 RNA5SP450-201ENST00000411206 102 ntBASIC1.87□□□□□ -2.11
MSH3P20585 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.87□□□□□ -2.11
MSH3P20585 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.87□□□□□ -2.11
MSH3P20585 snoU13.15-201ENST00000459407 104 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 185.9 ms