Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RNU6-1053P-201ENST00000515930 101 ntBASIC1.92□□□□□ -2.1
RTN3O95197 MIR4498-201ENST00000577599 66 ntBASIC1.92□□□□□ -2.1
RTN3O95197 MIR3198-2-201ENST00000577868 80 ntBASIC1.92□□□□□ -2.1
RTN3O95197 MIR3684-201ENST00000579779 74 ntBASIC1.92□□□□□ -2.1
RTN3O95197 AC112487.2-201ENST00000637950 304 ntBASIC1.92□□□□□ -2.1
RTN3O95197 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
RTN3O95197 RNU1-17P-201ENST00000363022 152 ntBASIC1.91□□□□□ -2.1
RTN3O95197 MIR9-3-201ENST00000385084 90 ntBASIC1.91□□□□□ -2.1
RTN3O95197 MIR30A-201ENST00000385092 71 ntBASIC1.91□□□□□ -2.1
RTN3O95197 RNU6-360P-201ENST00000390944 104 ntBASIC1.91□□□□□ -2.1
RTN3O95197 SNORD12B-201ENST00000410433 91 ntBASIC1.91□□□□□ -2.1
RTN3O95197 Y_RNA.605-201ENST00000410577 105 ntBASIC1.91□□□□□ -2.1
RTN3O95197 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.91□□□□□ -2.1
RTN3O95197 MRPS18CP6-201ENST00000423587 223 ntBASIC1.91□□□□□ -2.1
RTN3O95197 RNU6-625P-201ENST00000459412 107 ntBASIC1.91□□□□□ -2.1
RTN3O95197 SNORA40.9-201ENST00000515895 93 ntBASIC1.91□□□□□ -2.1
RTN3O95197 RNU1-142P-201ENST00000516682 145 ntBASIC1.91□□□□□ -2.1
RTN3O95197 AC093027.1-201ENST00000546698 429 ntBASIC1.91□□□□□ -2.1
RTN3O95197 AC006435.5-201ENST00000624486 112 ntBASIC1.91□□□□□ -2.1
RTN3O95197 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
RTN3O95197 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
RTN3O95197 MIR410-201ENST00000362222 80 ntBASIC1.9□□□□□ -2.11
RTN3O95197 RNU6-414P-201ENST00000363705 104 ntBASIC1.9□□□□□ -2.11
RTN3O95197 Y_RNA.187-201ENST00000363918 113 ntBASIC1.9□□□□□ -2.11
RTN3O95197 Y_RNA.314-201ENST00000365114 102 ntBASIC1.9□□□□□ -2.11
RTN3O95197 RNU6-439P-201ENST00000384188 106 ntBASIC1.9□□□□□ -2.11
RTN3O95197 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
RTN3O95197 FTH1P12-201ENST00000432137 551 ntBASIC1.9□□□□□ -2.11
RTN3O95197 SNORD65B-201ENST00000459126 73 ntBASIC1.9□□□□□ -2.11
RTN3O95197 AC008834.1-201ENST00000511612 175 ntBASIC1.9□□□□□ -2.11
RTN3O95197 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.9□□□□□ -2.11
RTN3O95197 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.9□□□□□ -2.11
RTN3O95197 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.9□□□□□ -2.11
RTN3O95197 MIR4781-201ENST00000585250 76 ntBASIC1.9□□□□□ -2.11
RTN3O95197 MIR8074-201ENST00000615081 81 ntBASIC1.9□□□□□ -2.11
RTN3O95197 AC084768.2-201ENST00000622736 221 ntBASIC1.9□□□□□ -2.11
RTN3O95197 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
RTN3O95197 Y_RNA.146-201ENST00000363549 102 ntBASIC1.89□□□□□ -2.11
RTN3O95197 SNORA16.1-201ENST00000364597 132 ntBASIC1.89□□□□□ -2.11
RTN3O95197 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.89□□□□□ -2.11
RTN3O95197 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
RTN3O95197 CYCSP49-201ENST00000420810 319 ntBASIC1.89□□□□□ -2.11
RTN3O95197 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.89□□□□□ -2.11
RTN3O95197 RNU7-169P-201ENST00000459456 61 ntBASIC1.89□□□□□ -2.11
RTN3O95197 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.89□□□□□ -2.11
RTN3O95197 AC010598.1-201ENST00000510378 103 ntBASIC1.89□□□□□ -2.11
RTN3O95197 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.89□□□□□ -2.11
RTN3O95197 RNU6-911P-201ENST00000516523 104 ntBASIC1.89□□□□□ -2.11
RTN3O95197 RNU6-699P-201ENST00000517081 110 ntBASIC1.89□□□□□ -2.11
RTN3O95197 LARP7P1-201ENST00000605576 316 ntBASIC1.89□□□□□ -2.11
RTN3O95197 U6.73-201ENST00000619194 103 ntBASIC1.89□□□□□ -2.11
RTN3O95197 Y_RNA.118-201ENST00000363300 101 ntBASIC1.88□□□□□ -2.11
RTN3O95197 MIR628-201ENST00000385229 95 ntBASIC1.88□□□□□ -2.11
RTN3O95197 RAB28P5-201ENST00000427490 651 ntBASIC1.88□□□□□ -2.11
RTN3O95197 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.88□□□□□ -2.11
RTN3O95197 AL163195.1-201ENST00000496941 348 ntBASIC1.88□□□□□ -2.11
RTN3O95197 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
RTN3O95197 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.88□□□□□ -2.11
RTN3O95197 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.88□□□□□ -2.11
RTN3O95197 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.88□□□□□ -2.11
RTN3O95197 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.88□□□□□ -2.11
RTN3O95197 AL442163.3-201ENST00000554110 156 ntBASIC1.88□□□□□ -2.11
RTN3O95197 AL008636.1-201ENST00000625038 1018 ntBASIC1.88□□□□□ -2.11
RTN3O95197 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
RTN3O95197 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
RTN3O95197 RNU4-73P-201ENST00000363164 141 ntBASIC1.87□□□□□ -2.11
RTN3O95197 Y_RNA.428-201ENST00000384078 102 ntBASIC1.87□□□□□ -2.11
RTN3O95197 RNY3P4-201ENST00000384428 101 ntBASIC1.87□□□□□ -2.11
RTN3O95197 RNU6-1186P-201ENST00000410429 97 ntBASIC1.87□□□□□ -2.11
RTN3O95197 RNA5SP475-201ENST00000410568 110 ntBASIC1.87□□□□□ -2.11
RTN3O95197 AC073910.1-201ENST00000445047 438 ntBASIC1.87□□□□□ -2.11
RTN3O95197 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.87□□□□□ -2.11
RTN3O95197 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.87□□□□□ -2.11
RTN3O95197 RPS26P45-201ENST00000471748 340 ntBASIC1.87□□□□□ -2.11
RTN3O95197 RPL26P26-201ENST00000480251 434 ntBASIC1.87□□□□□ -2.11
RTN3O95197 RPS29P11-201ENST00000496507 171 ntBASIC1.87□□□□□ -2.11
RTN3O95197 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
RTN3O95197 U2.1-201ENST00000618978 145 ntBASIC1.87□□□□□ -2.11
RTN3O95197 MIR3674-201ENST00000636576 68 ntBASIC1.87□□□□□ -2.11
RTN3O95197 U6.108-201ENST00000637764 58 ntBASIC1.87□□□□□ -2.11
RTN3O95197 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.86□□□□□ -2.11
RTN3O95197 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
RTN3O95197 Y_RNA.58-201ENST00000362807 102 ntBASIC1.86□□□□□ -2.11
RTN3O95197 Y_RNA.154-201ENST00000363624 102 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RNU4-42P-201ENST00000364738 142 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RNY3P1-201ENST00000365085 102 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RNY3-201ENST00000365484 102 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RNU6-1310P-201ENST00000384153 107 ntBASIC1.86□□□□□ -2.11
RTN3O95197 Y_RNA.463-201ENST00000384271 102 ntBASIC1.86□□□□□ -2.11
RTN3O95197 MIR1267-201ENST00000408723 78 ntBASIC1.86□□□□□ -2.11
RTN3O95197 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.86□□□□□ -2.11
RTN3O95197 HSPE1P21-201ENST00000438283 308 ntBASIC1.86□□□□□ -2.11
RTN3O95197 MRPS10P1-201ENST00000448483 130 ntBASIC1.86□□□□□ -2.11
RTN3O95197 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.86□□□□□ -2.11
RTN3O95197 snoU13.27-201ENST00000459278 104 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RPS27P22-201ENST00000478056 241 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RNU7-99P-201ENST00000516271 62 ntBASIC1.86□□□□□ -2.11
RTN3O95197 SNORA25.15-201ENST00000516487 89 ntBASIC1.86□□□□□ -2.11
RTN3O95197 RNU6-250P-201ENST00000516958 103 ntBASIC1.86□□□□□ -2.11
RTN3O95197 SNORD116.3-201ENST00000517176 78 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms