Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC018630.3-201ENST00000542637 96 ntBASIC2.18□□□□□ -2.06
LDB3O75112 MIR4513-201ENST00000581077 86 ntBASIC2.18□□□□□ -2.06
LDB3O75112 AC005562.2-201ENST00000618264 111 ntBASIC2.18□□□□□ -2.06
LDB3O75112 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.18□□□□□ -2.06
LDB3O75112 Z82209.1-201ENST00000422141 2135 ntBASIC2.18□□□□□ -2.06
LDB3O75112 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.17□□□□□ -2.06
LDB3O75112 Y_RNA.217-201ENST00000364214 105 ntBASIC2.17□□□□□ -2.06
LDB3O75112 Y_RNA.270-201ENST00000364693 104 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU6-187P-201ENST00000384139 106 ntBASIC2.17□□□□□ -2.06
LDB3O75112 Y_RNA.498-201ENST00000384460 102 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.17□□□□□ -2.06
LDB3O75112 Y_RNA.590-201ENST00000410140 107 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU2-61P-201ENST00000411069 191 ntBASIC2.17□□□□□ -2.06
LDB3O75112 AC004386.2-201ENST00000441858 148 ntBASIC2.17□□□□□ -2.06
LDB3O75112 AL138752.1-201ENST00000452964 351 ntBASIC2.17□□□□□ -2.06
LDB3O75112 SNORD2.1-201ENST00000458762 69 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU7-120P-201ENST00000459334 63 ntBASIC2.17□□□□□ -2.06
LDB3O75112 Y_RNA.641-201ENST00000459414 105 ntBASIC2.17□□□□□ -2.06
LDB3O75112 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.17□□□□□ -2.06
LDB3O75112 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU6-191P-201ENST00000516295 94 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU6-155P-201ENST00000516347 100 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNA5SP281-201ENST00000516504 135 ntBASIC2.17□□□□□ -2.06
LDB3O75112 RNU1-104P-201ENST00000517280 175 ntBASIC2.17□□□□□ -2.06
LDB3O75112 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.17□□□□□ -2.06
LDB3O75112 AP002392.1-201ENST00000537692 208 ntBASIC2.17□□□□□ -2.06
LDB3O75112 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.17□□□□□ -2.06
LDB3O75112 TCL6_2.1-201ENST00000615162 119 ntBASIC2.17□□□□□ -2.06
LDB3O75112 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.17□□□□□ -2.06
LDB3O75112 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
LDB3O75112 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.82-201ENST00000363000 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.92-201ENST00000363043 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 RNA5SP393-201ENST00000363423 117 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.235-201ENST00000364412 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.306-201ENST00000365015 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.312-201ENST00000365089 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.322-201ENST00000365151 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 MIR561-201ENST00000385216 97 ntBASIC2.16□□□□□ -2.06
LDB3O75112 RNU6-918P-201ENST00000391219 106 ntBASIC2.16□□□□□ -2.06
LDB3O75112 SUMO1P4-201ENST00000429430 302 ntBASIC2.16□□□□□ -2.06
LDB3O75112 AC005042.3-201ENST00000453230 174 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.650-201ENST00000459002 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.638-201ENST00000459374 113 ntBASIC2.16□□□□□ -2.06
LDB3O75112 AC074133.1-201ENST00000515696 183 ntBASIC2.16□□□□□ -2.06
LDB3O75112 RNU2-44P-201ENST00000516795 194 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.777-201ENST00000516982 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 RNA5SP402-201ENST00000517148 110 ntBASIC2.16□□□□□ -2.06
LDB3O75112 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.16□□□□□ -2.06
LDB3O75112 MIR4308-201ENST00000580634 81 ntBASIC2.16□□□□□ -2.06
LDB3O75112 MIR5194-201ENST00000582634 120 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.771-201ENST00000598668 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 AL008718.3-201ENST00000610217 321 ntBASIC2.16□□□□□ -2.06
LDB3O75112 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.16□□□□□ -2.06
LDB3O75112 Y_RNA.789-201ENST00000622480 102 ntBASIC2.16□□□□□ -2.06
LDB3O75112 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.16□□□□□ -2.06
LDB3O75112 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LDB3O75112 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.16□□□□□ -2.06
LDB3O75112 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LDB3O75112 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LDB3O75112 RNU1-62P-201ENST00000362599 164 ntBASIC2.15□□□□□ -2.07
LDB3O75112 SNORA72.2-201ENST00000365028 127 ntBASIC2.15□□□□□ -2.07
LDB3O75112 Y_RNA.329-201ENST00000365209 107 ntBASIC2.15□□□□□ -2.07
LDB3O75112 RNU6-546P-201ENST00000383991 107 ntBASIC2.15□□□□□ -2.07
LDB3O75112 SNORA67.2-201ENST00000384300 149 ntBASIC2.15□□□□□ -2.07
LDB3O75112 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LDB3O75112 MIR548M-201ENST00000408260 86 ntBASIC2.15□□□□□ -2.07
LDB3O75112 RNU4-53P-201ENST00000410828 140 ntBASIC2.15□□□□□ -2.07
LDB3O75112 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.15□□□□□ -2.07
LDB3O75112 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.15□□□□□ -2.07
LDB3O75112 RPL23AP36-201ENST00000413895 458 ntBASIC2.15□□□□□ -2.07
LDB3O75112 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.15□□□□□ -2.07
LDB3O75112 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.15□□□□□ -2.07
LDB3O75112 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.15□□□□□ -2.07
LDB3O75112 AC008413.1-201ENST00000511864 177 ntBASIC2.15□□□□□ -2.07
LDB3O75112 MIR449C-201ENST00000516047 92 ntBASIC2.15□□□□□ -2.07
LDB3O75112 Y_RNA.679-201ENST00000516416 91 ntBASIC2.15□□□□□ -2.07
LDB3O75112 RNU1-117P-201ENST00000517041 158 ntBASIC2.15□□□□□ -2.07
LDB3O75112 RNU2-12P-201ENST00000517216 168 ntBASIC2.15□□□□□ -2.07
LDB3O75112 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.15□□□□□ -2.07
LDB3O75112 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.15□□□□□ -2.07
LDB3O75112 MIR5007-201ENST00000583098 95 ntBASIC2.15□□□□□ -2.07
LDB3O75112 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.15□□□□□ -2.07
LDB3O75112 MIR6766-201ENST00000622641 72 ntBASIC2.15□□□□□ -2.07
LDB3O75112 snoU18.1-201ENST00000629629 71 ntBASIC2.15□□□□□ -2.07
LDB3O75112 MIR3674-201ENST00000636576 68 ntBASIC2.15□□□□□ -2.07
LDB3O75112 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
LDB3O75112 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
LDB3O75112 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LDB3O75112 RNU6-545P-201ENST00000362681 104 ntBASIC2.14□□□□□ -2.07
LDB3O75112 Y_RNA.308-201ENST00000365043 101 ntBASIC2.14□□□□□ -2.07
LDB3O75112 RNU1-148P-201ENST00000384472 162 ntBASIC2.14□□□□□ -2.07
LDB3O75112 RNU2-54P-201ENST00000410299 190 ntBASIC2.14□□□□□ -2.07
LDB3O75112 RNU2-32P-201ENST00000411193 191 ntBASIC2.14□□□□□ -2.07
LDB3O75112 AL390729.2-201ENST00000416137 156 ntBASIC2.14□□□□□ -2.07
LDB3O75112 CR769767.1-201ENST00000436337 346 ntBASIC2.14□□□□□ -2.07
LDB3O75112 AC018634.1-201ENST00000437554 401 ntBASIC2.14□□□□□ -2.07
LDB3O75112 AC104332.1-201ENST00000440471 797 ntBASIC2.14□□□□□ -2.07
LDB3O75112 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.14□□□□□ -2.07
LDB3O75112 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms