Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AF228730.4-201ENST00000421457 183 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 RAB28P5-201ENST00000427490 651 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 RPS27P22-201ENST00000478056 241 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC11O43248 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.98□□□□□ -2.09
HOXC11O43248 AL133255.1-201ENST00000606374 441 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.98□□□□□ -2.09
HOXC11O43248 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXC11O43248 MIR410-201ENST00000362222 80 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 RNU6-661P-201ENST00000362409 107 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 RNU6-1115P-201ENST00000362490 106 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 RNU6-414P-201ENST00000363705 104 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 FTH1P12-201ENST00000432137 551 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 AL603825.1-201ENST00000438481 80 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 HSPE1P9-201ENST00000440046 311 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 AC025033.1-201ENST00000463883 194 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 RPL23AP63-201ENST00000498752 471 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.97□□□□□ -2.09
HOXC11O43248 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.97□□□□□ -2.09
HOXC11O43248 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
HOXC11O43248 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
HOXC11O43248 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.97□□□□□ -2.09
HOXC11O43248 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXC11O43248 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXC11O43248 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXC11O43248 SNORA33-201ENST00000363664 130 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 SNORA63D-201ENST00000364359 132 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 Y_RNA.252-201ENST00000364556 101 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.96□□□□□ -2.1
HOXC11O43248 AL445685.2-201ENST00000422551 342 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 AL021397.1-201ENST00000451806 248 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 AC010469.2-201ENST00000496412 480 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 AL163195.1-201ENST00000496941 348 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.96□□□□□ -2.1
HOXC11O43248 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.96□□□□□ -2.1
HOXC11O43248 MIR4438-201ENST00000585271 93 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 AC092447.9-201ENST00000603395 144 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 AC103810.8-201ENST00000607347 118 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 U6.73-201ENST00000619194 103 ntBASIC1.96□□□□□ -2.1
HOXC11O43248 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXC11O43248 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HOXC11O43248 Y_RNA.27-201ENST00000362540 103 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 Y_RNA.197-201ENST00000364004 102 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 RNA5SP160-201ENST00000364866 120 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 RNU1-115P-201ENST00000365329 160 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 RNU6-360P-201ENST00000390944 104 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 SNORA40.18-201ENST00000391200 128 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 RNU11-5P-201ENST00000391216 129 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 COX6CP10-201ENST00000416832 224 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 AC073910.1-201ENST00000445047 438 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 AC025465.3-201ENST00000510570 311 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 RNA5SP437-201ENST00000517249 129 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 SNRPGP19-201ENST00000603826 189 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 AC012493.3-201ENST00000604494 112 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 MIR8074-201ENST00000615081 81 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.95□□□□□ -2.1
HOXC11O43248 AC138305.3-201ENST00000624988 240 ntBASIC1.95□□□□□ -2.1
HOXC11O43248 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HOXC11O43248 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HOXC11O43248 RNU6-271P-201ENST00000363858 105 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 SNORA20B-201ENST00000384220 132 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 MIR30A-201ENST00000385092 71 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HOXC11O43248 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HOXC11O43248 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXC11O43248 RPL31P63-201ENST00000422565 375 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXC11O43248 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXC11O43248 MRPS10P1-201ENST00000448483 130 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXC11O43248 SUMO1P2-201ENST00000452524 304 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 RNU7-99P-201ENST00000516271 62 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 AC023442.1-201ENST00000531247 422 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 AC023157.2-201ENST00000540596 141 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 HSBP1P1-201ENST00000555205 166 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 MIR4272-201ENST00000635924 64 ntBASIC1.94□□□□□ -2.1
HOXC11O43248 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXC11O43248 RNU6-950P-201ENST00000384651 107 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 Y_RNA.604-201ENST00000410574 102 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.93□□□□□ -2.1
HOXC11O43248 RN7SL274P-201ENST00000492268 272 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 RNU1-40P-201ENST00000516816 164 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 RNU1-97P-201ENST00000516872 164 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 MIR3198-2-201ENST00000577868 80 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 MIR4659A-201ENST00000580269 81 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 RPS29P30-201ENST00000600975 111 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 AC006380.1-201ENST00000603598 186 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 AC004467.1-201ENST00000615678 330 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 AC104985.2-201ENST00000620598 500 ntBASIC1.93□□□□□ -2.1
HOXC11O43248 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.92□□□□□ -2.1
HOXC11O43248 Y_RNA.5-201ENST00000362334 102 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 RNU6-407P-201ENST00000365280 104 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 RNU6-439P-201ENST00000384188 106 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 MIR1267-201ENST00000408723 78 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AC010154.1-201ENST00000425857 269 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AL160004.2-201ENST00000432935 350 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AC003989.2-201ENST00000440224 169 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms