Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 SNORA62.3-201ENST00000365110 153 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 RNU6-24P-201ENST00000384440 107 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 HMGN2P16-201ENST00000456802 261 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 AC099522.1-202ENST00000514718 367 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 MIR3683-201ENST00000580847 82 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 AL359075.3-201ENST00000613288 217 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 MIR7702-201ENST00000621931 59 ntBASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
PCDHB3Q9Y5E6 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 MIR126-201ENST00000362291 85 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 RNU6-832P-201ENST00000363319 107 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD6-201ENST00000365444 73 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 MIR577-201ENST00000385196 96 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 MIR23A-201ENST00000385245 73 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 MIR1253-201ENST00000408273 105 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 RNA5SP519-201ENST00000516480 119 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 AC023632.4-201ENST00000517783 191 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 AC006064.5-201ENST00000541782 248 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 MIR548Z-201ENST00000584743 97 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 AF117829.1-206ENST00000621883 3802 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 AP001486.2-201ENST00000561652 5113 ntBASIC4.06□□□□□ -1.76
PCDHB3Q9Y5E6 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.37-201ENST00000362606 108 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 RNU1-96P-201ENST00000364163 162 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 RNA5SP283-201ENST00000365604 119 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD116-22-201ENST00000384430 92 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 BTF3P4-201ENST00000418852 495 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 AL117339.2-201ENST00000430475 180 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 HMGN2P18-201ENST00000450680 270 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 AP001486.1-201ENST00000463339 476 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 RNU7-25P-201ENST00000516544 62 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 RNU6-267P-201ENST00000516714 103 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 MIR3618-201ENST00000580330 88 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 U2.20-201ENST00000613956 192 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 AC087741.2-201ENST00000619415 172 ntBASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHB3Q9Y5E6 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD115-13-201ENST00000363358 82 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD115-16-201ENST00000363887 82 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD115-28-201ENST00000363931 81 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD115-1-201ENST00000364961 82 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.360-201ENST00000365512 102 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 RNU6-1186P-201ENST00000410429 97 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 MRPL35P3-201ENST00000421557 364 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 RNA5SP246-201ENST00000458909 119 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 SNORD36C-201ENST00000516733 66 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.714-201ENST00000517065 90 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 RN7SL600P-201ENST00000581811 299 ntBASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.04□□□□□ -1.76
PCDHB3Q9Y5E6 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 AC018630.2-201ENST00000534866 2403 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.155-201ENST00000363632 101 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.190-201ENST00000363964 101 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.440-201ENST00000384120 114 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 Y_RNA.454-201ENST00000384224 113 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 MIR802-201ENST00000390235 94 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 SNORA3C-201ENST00000408792 125 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 AL356095.1-201ENST00000417217 199 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 AC099677.2-201ENST00000436385 175 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 RPL23AP46-201ENST00000438548 490 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 SNORA70.14-201ENST00000516205 110 ntBASIC4.03□□□□□ -1.76
PCDHB3Q9Y5E6 AC006441.5-201ENST00000612680 209 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms