Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RN7SL807P-201ENST00000470923 297 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 MRPS36P2-201ENST00000512569 299 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AC007751.1-201ENST00000529260 376 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AC018630.3-201ENST00000542637 96 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AC087499.8-201ENST00000578406 226 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 MIR3117-201ENST00000584034 78 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AP000553.6-201ENST00000641242 118 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 AC091564.4-201ENST00000533934 2194 ntBASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
HIF3AQ9Y2N7 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 AL049781.1-201ENST00000623195 3585 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 TNPO1P3-201ENST00000436471 2662 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 MIR423-201ENST00000362201 94 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 RNU1-72P-201ENST00000362976 153 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.111-201ENST00000363248 100 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 RNA5SP125-201ENST00000364843 120 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.486-201ENST00000384398 107 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 MIR891A-201ENST00000401237 79 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 AC002075.2-201ENST00000425207 252 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 HMGN2P32-201ENST00000444648 269 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-412P-201ENST00000516434 106 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 AC025647.1-201ENST00000517879 253 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 AC008011.1-201ENST00000545989 227 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 MIR3129-201ENST00000581095 76 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 MIR5187-201ENST00000583479 76 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 MIR6875-201ENST00000617506 72 ntBASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.31□□□□□ -1.88
HIF3AQ9Y2N7 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-640P-201ENST00000363693 105 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 U8.6-201ENST00000364939 135 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-1235P-201ENST00000384559 107 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.549-201ENST00000384657 102 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 MIR30B-201ENST00000384850 88 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 MIR624-201ENST00000385217 97 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 SNORA26-201ENST00000391286 122 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 RHEBP3-201ENST00000411920 351 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AC016909.1-201ENST00000415916 166 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AC008134.1-201ENST00000420943 193 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AF228730.3-201ENST00000436691 102 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 RPS29P31-201ENST00000446147 164 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AC245102.2-201ENST00000448956 180 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-498P-201ENST00000459468 107 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AL133162.1-201ENST00000463228 453 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AC096725.1-201ENST00000514266 313 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 MIR4286-201ENST00000580651 93 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 MIR2681-201ENST00000581814 105 ntBASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HIF3AQ9Y2N7 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 RNA5SP42-201ENST00000364278 115 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-1131P-201ENST00000364955 107 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-294P-201ENST00000364999 102 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.348-201ENST00000365403 103 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-756P-201ENST00000383997 107 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 SNORA51.10-201ENST00000384418 136 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 MIR134-201ENST00000385258 73 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 SNORD12C-201ENST00000386307 89 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AL590004.2-201ENST00000404787 371 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 Z98941.1-201ENST00000407764 100 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 CALM2P4-201ENST00000430810 426 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 MTATP6P21-201ENST00000440681 189 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AC091153.1-201ENST00000466297 402 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-579P-201ENST00000516879 102 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AC011604.1-201ENST00000545978 196 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AC007012.1-201ENST00000567192 175 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 MIR4738-201ENST00000579134 87 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 MIR92B-201ENST00000607575 96 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AC002064.3-201ENST00000623448 346 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 AC034229.5-201ENST00000624258 185 ntBASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HIF3AQ9Y2N7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.66-201ENST00000362862 102 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 Y_RNA.281-201ENST00000364774 94 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 RNU6-438P-201ENST00000365561 103 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 SNORA1-201ENST00000384107 130 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 MIR562-201ENST00000384894 95 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 AL139247.1-201ENST00000422768 325 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 RPL30P4-201ENST00000429309 333 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms