Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA2Q9Y261 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA2Q9Y261 AC125232.2-201ENST00000592457 143 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 AC092794.1-201ENST00000612734 582 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
FOXA2Q9Y261 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 RNU6-1123P-201ENST00000362347 106 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 MIR504-201ENST00000385065 83 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 RNU6-876P-201ENST00000391295 104 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 RPS27P16-201ENST00000425758 201 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 MRPS10P1-201ENST00000448483 130 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 RPL31P58-201ENST00000469001 379 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC010469.2-201ENST00000496412 480 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AL442163.3-201ENST00000554110 156 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC004584.2-201ENST00000570407 410 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC022217.4-201ENST00000604389 163 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 MIR502-201ENST00000606349 86 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 uc_338.5-201ENST00000611839 155 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC092794.2-201ENST00000620933 563 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AC006435.5-201ENST00000624486 112 ntBASIC1.36□□□□□ -2.19
FOXA2Q9Y261 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.36□□□□□ -2.19
FOXA2Q9Y261 AL161722.3-201ENST00000605789 2983 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.35□□□□□ -2.19
FOXA2Q9Y261 RNU6-1264P-201ENST00000383891 107 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 RNU6-997P-201ENST00000384725 107 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 RNU6-1031P-201ENST00000384773 107 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 MIR329-1-201ENST00000385028 80 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 SNORA75.4-201ENST00000391278 119 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 MRPL42P3-201ENST00000401492 326 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 SNX2P2-201ENST00000424553 323 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC007677.1-201ENST00000445757 515 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC010598.1-201ENST00000510378 103 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 SNORA31.10-201ENST00000516482 106 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 SNORA25.15-201ENST00000516487 89 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 RNU6-548P-201ENST00000517083 115 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 RNU7-128P-201ENST00000517247 62 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC022868.1-201ENST00000517767 391 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC021506.2-201ENST00000612354 169 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AL078604.3-201ENST00000615580 211 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC104260.1-201ENST00000616660 539 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 MIR8054-201ENST00000620877 86 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.35□□□□□ -2.19
FOXA2Q9Y261 AC073544.1-201ENST00000600110 1595 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.404-201ENST00000383978 102 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.557-201ENST00000384680 107 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 RNU6-440P-201ENST00000390882 105 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 RNA5SP213-201ENST00000391031 106 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 RNU11-5P-201ENST00000391216 129 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 AL034345.1-201ENST00000407768 123 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA2Q9Y261 AC099513.1-201ENST00000490423 301 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 AC116353.2-201ENST00000505332 712 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA2Q9Y261 SCARNA16.2-201ENST00000516520 172 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 RNU6-250P-201ENST00000516958 103 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 AL365434.2-201ENST00000607979 234 ntBASIC1.34□□□□□ -2.19
FOXA2Q9Y261 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.34□□□□□ -2.19
FOXA2Q9Y261 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
FOXA2Q9Y261 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
FOXA2Q9Y261 RNU6-874P-201ENST00000362390 105 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 RNU6-845P-201ENST00000362578 103 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 RNA5SP361-201ENST00000362686 118 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.248-201ENST00000364501 109 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.358-201ENST00000365491 99 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.498-201ENST00000384460 102 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 MTCYBP4-201ENST00000401524 249 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 PCNPP5-201ENST00000452246 481 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA2Q9Y261 AC074133.1-201ENST00000515696 183 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 SUMO2P16-201ENST00000519475 264 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 MIR3684-201ENST00000579779 74 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 AC073413.2-201ENST00000604332 360 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 PRR13P7-201ENST00000605538 430 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 MIR8081-201ENST00000611533 95 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.33□□□□□ -2.2
FOXA2Q9Y261 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
FOXA2Q9Y261 RNA5SP363-201ENST00000365072 115 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 RNU6-1145P-201ENST00000384246 107 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 AL627390.1-201ENST00000396055 340 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.32□□□□□ -2.2
FOXA2Q9Y261 RPS29P23-201ENST00000458635 123 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.635-201ENST00000459041 101 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 RPL17P19-201ENST00000489069 552 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.32□□□□□ -2.2
FOXA2Q9Y261 RPL21P9-201ENST00000556149 474 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 AL021879.1-201ENST00000611756 288 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 AL669831.3-213ENST00000636676 183 ntBASIC1.32□□□□□ -2.2
FOXA2Q9Y261 AC018630.2-201ENST00000534866 2403 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 803.4 ms