Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.82□□□□□ -1.8
NOD1Q9Y239 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
NOD1Q9Y239 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NOD1Q9Y239 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NOD1Q9Y239 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NOD1Q9Y239 RNU1-22P-201ENST00000363334 158 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 SNORA25.7-201ENST00000364375 127 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 Y_RNA.525-201ENST00000384570 113 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 Y_RNA.563-201ENST00000384707 108 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 RNU2-52P-201ENST00000410680 190 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 RNU2-32P-201ENST00000411193 191 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 RN7SL504P-201ENST00000494496 287 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 AC090049.2-201ENST00000550377 109 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 AC105245.1-201ENST00000581934 244 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 MIR4438-201ENST00000585271 93 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 MIR7157-201ENST00000635801 60 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NOD1Q9Y239 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.81□□□□□ -1.8
NOD1Q9Y239 AL391516.1-201ENST00000554380 2449 ntBASIC3.81□□□□□ -1.8
NOD1Q9Y239 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NOD1Q9Y239 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.81□□□□□ -1.8
NOD1Q9Y239 RNU6-743P-201ENST00000364151 106 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 RNU6-978P-201ENST00000364371 103 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.8□□□□□ -1.8
NOD1Q9Y239 EEF1B2P7-201ENST00000451177 676 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 AC023449.1-201ENST00000454464 154 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 AP001486.1-201ENST00000463339 476 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 RN7SL594P-201ENST00000470590 287 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 AC097462.1-201ENST00000514125 324 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 RPL23AP91-201ENST00000569211 455 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 MIR2681-201ENST00000581814 105 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 MIR4325-201ENST00000583049 90 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 MIR3117-201ENST00000584034 78 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
NOD1Q9Y239 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NOD1Q9Y239 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NOD1Q9Y239 AC103988.1-201ENST00000566382 2177 ntBASIC3.8□□□□□ -1.8
NOD1Q9Y239 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NOD1Q9Y239 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
NOD1Q9Y239 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NOD1Q9Y239 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NOD1Q9Y239 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 RNA5SP374-201ENST00000362939 125 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 Y_RNA.203-201ENST00000364106 102 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 Y_RNA.294-201ENST00000364916 102 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 AC009969.1-201ENST00000438726 172 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 RPS4XP11-201ENST00000446897 772 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 AL049873.1-201ENST00000480540 376 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 PHBP14-201ENST00000512887 367 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 RNA5SP76-201ENST00000516277 87 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 RNU7-172P-201ENST00000517125 64 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 PRELID2P1-201ENST00000552837 301 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 AL160236.1-201ENST00000556317 195 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 Y_RNA.757-201ENST00000578934 114 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 AC107294.3-201ENST00000609211 526 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 uc_338.4-201ENST00000616635 176 ntBASIC3.79□□□□□ -1.8
NOD1Q9Y239 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
NOD1Q9Y239 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NOD1Q9Y239 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
NOD1Q9Y239 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
NOD1Q9Y239 AC080128.1-201ENST00000474389 1917 ntBASIC3.78□□□□□ -1.8
NOD1Q9Y239 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
NOD1Q9Y239 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NOD1Q9Y239 RN7SKP111-201ENST00000410349 271 ntBASIC3.78□□□□□ -1.8
NOD1Q9Y239 RNU2-70P-201ENST00000410718 179 ntBASIC3.78□□□□□ -1.8
NOD1Q9Y239 RPS29P31-201ENST00000446147 164 ntBASIC3.78□□□□□ -1.8
NOD1Q9Y239 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.78□□□□□ -1.8
NOD1Q9Y239 MIR5739-201ENST00000619803 80 ntBASIC3.78□□□□□ -1.8
NOD1Q9Y239 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.78□□□□□ -1.8
NOD1Q9Y239 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NOD1Q9Y239 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.78□□□□□ -1.8
NOD1Q9Y239 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
NOD1Q9Y239 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NOD1Q9Y239 AC138915.1-201ENST00000565427 1685 ntBASIC3.78□□□□□ -1.81
NOD1Q9Y239 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.77□□□□□ -1.81
NOD1Q9Y239 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
NOD1Q9Y239 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.77□□□□□ -1.81
NOD1Q9Y239 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NOD1Q9Y239 RNU6-235P-201ENST00000362644 107 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 RNU6-153P-201ENST00000364422 104 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 FO393413.1-201ENST00000402892 195 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 RNU6-1064P-201ENST00000410626 104 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 RNA5SP39-201ENST00000411245 120 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 MTCO1P44-201ENST00000441935 243 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 AC025750.2-201ENST00000442609 450 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 AC245102.2-201ENST00000448956 180 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 RPL27AP5-201ENST00000469428 449 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 CKS1BP2-201ENST00000497342 240 ntBASIC3.77□□□□□ -1.81
NOD1Q9Y239 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.77□□□□□ -1.81
NOD1Q9Y239 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.77□□□□□ -1.81
NOD1Q9Y239 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.77□□□□□ -1.81
NOD1Q9Y239 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NOD1Q9Y239 AL357134.1-201ENST00000445848 426 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 188.2 ms