Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SNORA25B-201ENST00000365507 128 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 RNU6-975P-201ENST00000384296 105 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 Y_RNA.483-201ENST00000384380 101 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 TOMM22P2-201ENST00000430735 237 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS4AQ9UN37 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS4AQ9UN37 CKS1BP2-201ENST00000497342 240 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 SEPT14P8-201ENST00000508026 178 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 RNU6-966P-201ENST00000516479 104 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 RNU1-117P-201ENST00000517041 158 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 IGLV3-17-201ENST00000519099 244 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 SNORD113-5-201ENST00000607261 78 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 AC004467.1-201ENST00000615678 330 ntBASIC2.41□□□□□ -2.02
VPS4AQ9UN37 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS4AQ9UN37 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
VPS4AQ9UN37 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
VPS4AQ9UN37 SNORA38-201ENST00000363946 132 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.461-201ENST00000384263 103 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 RNU6-102P-201ENST00000384485 104 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.562-201ENST00000384695 113 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 MT-TG-201ENST00000387429 68 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AL357139.1-201ENST00000407792 426 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 MIR1302-6-201ENST00000408466 90 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 MIR1185-2-201ENST00000408687 86 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS4AQ9UN37 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AL591806.2-201ENST00000433122 173 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 RNU2-12P-201ENST00000517216 168 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AC087441.2-201ENST00000529141 262 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AL109918.3-201ENST00000603072 338 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AC025754.2-201ENST00000606491 432 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AL137847.3-201ENST00000611521 109 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AL590240.4-201ENST00000616908 390 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AC091932.3-201ENST00000624223 323 ntBASIC2.4□□□□□ -2.03
VPS4AQ9UN37 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
VPS4AQ9UN37 AC010615.1-201ENST00000594254 1764 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS4AQ9UN37 MIR340-201ENST00000362125 95 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 MIR335-201ENST00000362173 94 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 RNU6-1305P-201ENST00000364353 104 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.286-201ENST00000364813 102 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.361-201ENST00000365515 120 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.541-201ENST00000384640 113 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS4AQ9UN37 MTCO1P44-201ENST00000441935 243 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 SNORD127-201ENST00000458892 86 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 TRBVB-201ENST00000477100 408 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS4AQ9UN37 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS4AQ9UN37 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS4AQ9UN37 AC011373.1-201ENST00000607270 237 ntBASIC2.39□□□□□ -2.03
VPS4AQ9UN37 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.401-201ENST00000383965 117 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 RNU1-52P-201ENST00000384190 164 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 RNU6-505P-201ENST00000384427 107 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 RNU2-54P-201ENST00000410299 190 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 RNA5SP475-201ENST00000410568 110 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 AC096920.1-201ENST00000423991 241 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 RNU6-667P-201ENST00000517186 102 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 AC005828.6-201ENST00000606610 232 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 AC062037.2-201ENST00000610137 73 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 U4.3-201ENST00000621047 82 ntBASIC2.38□□□□□ -2.03
VPS4AQ9UN37 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.38□□□□□ -2.03
VPS4AQ9UN37 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
VPS4AQ9UN37 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU4-90P-201ENST00000362773 141 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.243-201ENST00000364481 109 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU6-290P-201ENST00000365212 101 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.446-201ENST00000384178 104 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU6-1026P-201ENST00000384465 108 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU4-30P-201ENST00000410245 143 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RPL23AP36-201ENST00000413895 458 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC009963.1-201ENST00000417265 157 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC123900.1-201ENST00000420390 96 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AL137159.1-201ENST00000452808 512 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC005042.3-201ENST00000453230 174 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU6-221P-201ENST00000459541 99 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 HMGB3P17-201ENST00000504195 649 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC107222.1-201ENST00000510899 637 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU6-570P-201ENST00000517051 105 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNU6-548P-201ENST00000517083 115 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 RNA5SP490-201ENST00000517141 136 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC121758.2-201ENST00000553271 193 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 MIR4753-201ENST00000585119 83 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS4AQ9UN37 U6.104-201ENST00000637979 90 ntBASIC2.37□□□□□ -2.03
VPS4AQ9UN37 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS4AQ9UN37 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS4AQ9UN37 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNA5SP456-201ENST00000364002 114 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.288-201ENST00000364854 92 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNU1-51P-201ENST00000365345 176 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms