Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SNORD18B-201ENST00000365659 72 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-476P-201ENST00000384726 107 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 MIR624-201ENST00000385217 97 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-220P-201ENST00000390919 107 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 AC244505.4-201ENST00000434905 287 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 SSXP5-201ENST00000443473 287 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 AL357552.1-201ENST00000445254 415 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RNU1-131P-201ENST00000458943 161 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 AC018868.1-201ENST00000491307 315 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RNA5SP76-201ENST00000516277 87 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-365P-201ENST00000517113 106 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RNU7-128P-201ENST00000517247 62 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 AL359075.3-201ENST00000613288 217 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 AL021368.2-201ENST00000606125 5352 ntBASIC3.62□□□□□ -1.83
DEPDC4Q8N2C3 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 SNORD21-201ENST00000383953 95 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-1144P-201ENST00000384247 104 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 MIR592-201ENST00000384959 97 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 MIR1289-1-201ENST00000408836 144 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 AC018634.1-201ENST00000437554 401 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 HMGN1P7-201ENST00000491722 313 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 RN7SKP83-201ENST00000516512 178 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-667P-201ENST00000517186 102 ntBASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
DEPDC4Q8N2C3 AC092435.3-201ENST00000565538 3654 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 Y_RNA.99-201ENST00000363138 105 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 Y_RNA.486-201ENST00000384398 107 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 AL031121.1-201ENST00000406553 254 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-1186P-201ENST00000410429 97 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 RNA5SP127-201ENST00000411051 133 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 RN7SL330P-201ENST00000469709 307 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 AC104619.4-201ENST00000510773 249 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-504P-201ENST00000516568 104 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 RN7SKP209-201ENST00000516888 304 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 RNU1-45P-201ENST00000517191 141 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 CYCSP26-201ENST00000534107 320 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 MIR3944-201ENST00000581277 108 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 AC087685.1-201ENST00000587507 141 ntBASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
DEPDC4Q8N2C3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 Y_RNA.66-201ENST00000362862 102 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-153P-201ENST00000364422 104 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 MIR515-2-201ENST00000384883 83 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 MIR515-1-201ENST00000384884 83 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 PTMAP2-201ENST00000397627 327 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 AC083863.1-201ENST00000438811 231 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 RN7SL636P-201ENST00000497504 294 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-772P-201ENST00000516042 105 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 RNU6-341P-201ENST00000516973 96 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 RMST_8.1-201ENST00000610287 165 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 MIR338-201ENST00000636369 67 ntBASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
DEPDC4Q8N2C3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
DEPDC4Q8N2C3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 MIR372-201ENST00000362225 67 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 MIR208A-201ENST00000362287 71 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 RNU6-235P-201ENST00000362644 107 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 RNU6-647P-201ENST00000364243 107 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 Y_RNA.294-201ENST00000364916 102 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 RNA5SP283-201ENST00000365604 119 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 SNORA26.7-201ENST00000391288 122 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 AL356095.1-201ENST00000417217 199 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 AC104332.2-201ENST00000429959 156 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 AL117339.2-201ENST00000430475 180 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 NDUFA4P2-201ENST00000489989 244 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 YWHAEP4-201ENST00000505390 198 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 SNORA18.4-201ENST00000516440 124 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 AC008739.3-201ENST00000603262 127 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 AL449363.1-201ENST00000617815 186 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 MIR6079-201ENST00000635807 62 ntBASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
DEPDC4Q8N2C3 Y_RNA.114-201ENST00000363265 113 ntBASIC3.57□□□□□ -1.84
DEPDC4Q8N2C3 RNU6-461P-201ENST00000364195 107 ntBASIC3.57□□□□□ -1.84
DEPDC4Q8N2C3 RNA5SP130-201ENST00000364431 114 ntBASIC3.57□□□□□ -1.84
DEPDC4Q8N2C3 Y_RNA.253-201ENST00000364562 112 ntBASIC3.57□□□□□ -1.84
DEPDC4Q8N2C3 SNORA25B-201ENST00000365507 128 ntBASIC3.57□□□□□ -1.84
DEPDC4Q8N2C3 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms