Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR597-201ENST00000384968 97 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 AL078595.1-201ENST00000404458 226 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 RNU2-40P-201ENST00000410833 196 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 AL357134.1-201ENST00000445848 426 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.06□□□□□ -2.08
USP41Q3LFD5 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.06□□□□□ -2.08
USP41Q3LFD5 SNORA40.9-201ENST00000515895 93 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 RNA5SP458-201ENST00000516188 119 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 RNU6-988P-201ENST00000519081 107 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 MIR3171-201ENST00000584270 74 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 AC007229.1-201ENST00000590455 412 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 AC091812.1-201ENST00000432235 1948 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.06□□□□□ -2.08
USP41Q3LFD5 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.06□□□□□ -2.08
USP41Q3LFD5 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.06□□□□□ -2.08
USP41Q3LFD5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP41Q3LFD5 AL359851.1-201ENST00000569460 4997 ntBASIC2.06□□□□□ -2.08
USP41Q3LFD5 AL159152.1-201ENST00000635019 2587 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 Y_RNA.27-201ENST00000362540 103 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 Y_RNA.148-201ENST00000363557 117 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RNU6-694P-201ENST00000364071 147 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 SNORA22B-201ENST00000383876 138 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 Y_RNA.498-201ENST00000384460 102 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 SUMO2P12-201ENST00000405924 140 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RNU1-131P-201ENST00000458943 161 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RNU6-625P-201ENST00000459412 107 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.05□□□□□ -2.08
USP41Q3LFD5 AC067942.3-201ENST00000512025 362 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 SNORA25.10-201ENST00000515926 124 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RNU2-34P-201ENST00000516534 121 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RNU1-40P-201ENST00000516816 164 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RNU1-97P-201ENST00000516872 164 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 AC018448.1-201ENST00000552843 316 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 AC020661.2-201ENST00000560114 134 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RPS29P30-201ENST00000600975 111 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 AL356055.1-201ENST00000602528 446 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 AC011476.5-201ENST00000615594 130 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 AL162373.1-201ENST00000620433 407 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 AC006001.4-201ENST00000622243 395 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 snoZ196.1-201ENST00000625269 89 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.05□□□□□ -2.08
USP41Q3LFD5 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.05□□□□□ -2.08
USP41Q3LFD5 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
USP41Q3LFD5 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
USP41Q3LFD5 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
USP41Q3LFD5 RNU1-17P-201ENST00000363022 152 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 RNU4-76P-201ENST00000364509 141 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 SNORA16B-201ENST00000364674 135 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 RNU6-1235P-201ENST00000384559 107 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 SNORD78.2-201ENST00000391076 69 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
USP41Q3LFD5 AC005534.2-201ENST00000431047 433 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 RNU6-498P-201ENST00000459468 107 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 AL163540.1-201ENST00000485382 386 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 AC010469.2-201ENST00000496412 480 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 RPL23AP63-201ENST00000498752 471 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 RNU6-408P-201ENST00000515910 100 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 SNORA40.14-201ENST00000516543 86 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 MIR514B-201ENST00000516774 80 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 Y_RNA.711-201ENST00000516993 102 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
USP41Q3LFD5 GNAI2P1-201ENST00000541815 315 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 AC005592.1-201ENST00000566527 1640 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 MIR3169-201ENST00000578032 83 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.04□□□□□ -2.08
USP41Q3LFD5 SNRPGP19-201ENST00000603826 189 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 U6.92-201ENST00000636464 89 ntBASIC2.04□□□□□ -2.08
USP41Q3LFD5 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
USP41Q3LFD5 RNA5SP160-201ENST00000364866 120 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 RNA5SP465-201ENST00000391195 109 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 MIR1302-11-201ENST00000408051 138 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 MIR1302-9-201ENST00000408365 138 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 MIR1283-2-201ENST00000408621 87 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 MIR1302-10-201ENST00000408734 138 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 ELOCP21-201ENST00000412558 336 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.03□□□□□ -2.08
USP41Q3LFD5 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.03□□□□□ -2.08
USP41Q3LFD5 FCF1P4-201ENST00000448326 183 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 NDUFB4P10-201ENST00000452541 359 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.03□□□□□ -2.08
USP41Q3LFD5 AC074133.1-201ENST00000515696 183 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 RNU6-1041P-201ENST00000516254 102 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 RNU6-856P-201ENST00000516959 98 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 MIR4659A-201ENST00000580269 81 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 MIR1302-2-201ENST00000607096 138 ntBASIC2.03□□□□□ -2.08
USP41Q3LFD5 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.03□□□□□ -2.08
USP41Q3LFD5 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
USP41Q3LFD5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
USP41Q3LFD5 SNORD14.1-201ENST00000365609 90 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 RNU6-1264P-201ENST00000383891 107 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 RNU6-1227P-201ENST00000383981 107 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 Y_RNA.424-201ENST00000384063 103 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 MIR1185-2-201ENST00000408687 86 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 AL356379.1-201ENST00000414105 126 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.02□□□□□ -2.09
USP41Q3LFD5 AC112492.4-201ENST00000456549 352 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 RNU6-475P-201ENST00000516073 104 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 161.2 ms