Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXC1Q12948 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXC1Q12948 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXC1Q12948 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXC1Q12948 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXC1Q12948 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
FOXC1Q12948 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
FOXC1Q12948 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXC1Q12948 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXC1Q12948 RNU6-590P-201ENST00000365039 107 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 Y_RNA.351-201ENST00000365436 96 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXC1Q12948 Y_RNA.430-201ENST00000384081 110 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 MIR522-201ENST00000385071 87 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 RNA5SP144-201ENST00000410846 116 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.84□□□□□ -1.79
FOXC1Q12948 RNU7-80P-201ENST00000459562 61 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 RN7SKP18-201ENST00000516005 275 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 AC004812.1-201ENST00000540773 146 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 MIR3690-201ENST00000580266 75 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
FOXC1Q12948 AC145423.2-201ENST00000610631 239 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 uc_338.14-201ENST00000613162 166 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 UBE3AP2-201ENST00000429033 2259 ntBASIC3.84□□□□□ -1.79
FOXC1Q12948 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXC1Q12948 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXC1Q12948 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXC1Q12948 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
FOXC1Q12948 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXC1Q12948 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXC1Q12948 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
FOXC1Q12948 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
FOXC1Q12948 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXC1Q12948 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXC1Q12948 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXC1Q12948 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 MIR126-201ENST00000362291 85 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 HMGN2P8-201ENST00000391458 268 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 Z74021.1-201ENST00000423610 407 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 AL512326.2-201ENST00000426359 151 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXC1Q12948 AC115115.1-201ENST00000449927 248 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 RNU7-23P-201ENST00000459465 62 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 RN7SKP83-201ENST00000516512 178 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 AL358944.1-201ENST00000528537 144 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 MIR4778-201ENST00000577635 80 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 MIR4439-201ENST00000583746 80 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 AC091167.4-201ENST00000605079 184 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 U2.20-201ENST00000613956 192 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXC1Q12948 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 AC018630.2-201ENST00000534866 2403 ntBASIC3.83□□□□□ -1.8
FOXC1Q12948 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXC1Q12948 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
FOXC1Q12948 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXC1Q12948 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXC1Q12948 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXC1Q12948 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
FOXC1Q12948 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXC1Q12948 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXC1Q12948 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXC1Q12948 AC139713.2-215ENST00000641428 5037 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 SNORD35B-201ENST00000363660 87 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 U8.15-201ENST00000390947 134 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
FOXC1Q12948 AC097463.2-201ENST00000421074 142 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXC1Q12948 RNA5SP310-201ENST00000459084 116 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 RN7SL601P-201ENST00000471221 293 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 RNA5SP360-201ENST00000516555 118 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 RNU7-128P-201ENST00000517247 62 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 AC078899.2-201ENST00000595282 212 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 AL513534.2-201ENST00000603836 250 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 AC022217.4-201ENST00000604389 163 ntBASIC3.82□□□□□ -1.8
FOXC1Q12948 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXC1Q12948 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
FOXC1Q12948 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXC1Q12948 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXC1Q12948 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXC1Q12948 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXC1Q12948 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXC1Q12948 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXC1Q12948 SCN1A-220ENST00000641603 12506 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
FOXC1Q12948 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXC1Q12948 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXC1Q12948 RNU4-16P-201ENST00000364737 141 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 SNORD66.1-201ENST00000391230 76 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 SNORA7.5-201ENST00000410672 110 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 AL445646.1-201ENST00000431784 216 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 AC233266.1-201ENST00000454518 96 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 RPL23AP63-201ENST00000498752 471 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 SNORA31.4-201ENST00000516049 129 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 RNU6-1291P-201ENST00000516591 104 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms