Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD3P31249 NDUFB4P10-201ENST00000452541 359 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXD3P31249 CYP2C59P-201ENST00000457790 269 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.14□□□□□ -2.07
HOXD3P31249 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXD3P31249 RNA5SP490-201ENST00000517141 136 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXD3P31249 MIR3945-201ENST00000581853 98 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 ZNF861P-201ENST00000588126 639 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AC009779.6-201ENST00000603972 165 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AC090115.4-201ENST00000609970 188 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 AL442067.1-201ENST00000613261 223 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.14□□□□□ -2.07
HOXD3P31249 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD3P31249 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD3P31249 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.13□□□□□ -2.07
HOXD3P31249 MIR26A1-201ENST00000362205 77 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 Y_RNA.274-201ENST00000364714 101 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 RNU6-514P-201ENST00000384208 107 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 MIR181A2-201ENST00000384863 110 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AL138827.1-201ENST00000402666 306 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AL355796.1-201ENST00000406706 323 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 MIR1261-201ENST00000408659 82 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 RNU2-63P-201ENST00000410792 194 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AL135790.2-201ENST00000437701 267 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AC016925.1-201ENST00000458303 298 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 RNU7-26P-201ENST00000458980 63 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.13□□□□□ -2.07
HOXD3P31249 AC008413.1-201ENST00000511864 177 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AC027419.1-201ENST00000522976 328 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.13□□□□□ -2.07
HOXD3P31249 AL512605.2-201ENST00000592972 256 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 AL162424.1-201ENST00000602325 221 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 snoU18.1-201ENST00000629629 71 ntBASIC2.13□□□□□ -2.07
HOXD3P31249 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD3P31249 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD3P31249 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.13□□□□□ -2.07
HOXD3P31249 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXD3P31249 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
HOXD3P31249 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
HOXD3P31249 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.12□□□□□ -2.07
HOXD3P31249 UBE2WP1-201ENST00000362030 340 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 RNU6-859P-201ENST00000362728 107 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 Y_RNA.172-201ENST00000363765 102 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 RNU1-112P-201ENST00000364401 164 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 RNA5SP240-201ENST00000365355 128 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 MIR592-201ENST00000384959 97 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AC007064.1-201ENST00000412238 351 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AL139156.1-201ENST00000412785 841 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD3P31249 Z98949.2-201ENST00000440996 144 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AC003982.1-202ENST00000469928 248 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 SRIP1-201ENST00000489235 288 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD3P31249 AC093259.1-201ENST00000509755 300 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD3P31249 SNORA48.11-201ENST00000517015 89 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AC091544.4-201ENST00000555268 342 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXD3P31249 MIR4658-201ENST00000584344 65 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 AC011921.3-201ENST00000605540 361 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 snoZ196.1-201ENST00000625269 89 ntBASIC2.12□□□□□ -2.07
HOXD3P31249 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.12□□□□□ -2.07
HOXD3P31249 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXD3P31249 MIR340-201ENST00000362125 95 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 Y_RNA.124-201ENST00000363339 93 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNA5SP393-201ENST00000363423 117 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 Y_RNA.217-201ENST00000364214 105 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNY1-201ENST00000364228 113 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNU6-200P-201ENST00000364743 107 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 Y_RNA.292-201ENST00000364904 97 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 MIR561-201ENST00000385216 97 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 MIR1298-201ENST00000408783 112 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 Y_RNA.590-201ENST00000410140 107 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNA5SP21-201ENST00000410917 96 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 SNORD65B-201ENST00000459126 73 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 Y_RNA.641-201ENST00000459414 105 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 AC010531.2-201ENST00000465012 153 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.11□□□□□ -2.07
HOXD3P31249 RNU4-71P-201ENST00000516258 113 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNY3P16-201ENST00000516338 101 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 SNORA9.3-201ENST00000516383 129 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNU6-667P-201ENST00000517186 102 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RNU1-104P-201ENST00000517280 175 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 MIR3605-201ENST00000583214 100 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXD3P31249 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXD3P31249 Z82209.1-201ENST00000422141 2135 ntBASIC2.11□□□□□ -2.07
HOXD3P31249 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD3P31249 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD3P31249 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HOXD3P31249 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HOXD3P31249 AC134026.1-201ENST00000623249 2239 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 RNU6-1048P-201ENST00000364054 107 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 RNU6-801P-201ENST00000364087 105 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 RNY4P28-201ENST00000365281 93 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms