Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR1267-201ENST00000408723 78 ntBASIC1.34□□□□□ -2.19
SDC1P18827 AC098614.3-201ENST00000438957 440 ntBASIC1.34□□□□□ -2.19
SDC1P18827 JTBP1-201ENST00000441314 247 ntBASIC1.34□□□□□ -2.19
SDC1P18827 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.34□□□□□ -2.19
SDC1P18827 AL606517.2-201ENST00000442855 241 ntBASIC1.34□□□□□ -2.19
SDC1P18827 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.34□□□□□ -2.19
SDC1P18827 RPL17P19-201ENST00000489069 552 ntBASIC1.34□□□□□ -2.19
SDC1P18827 AL163195.1-201ENST00000496941 348 ntBASIC1.34□□□□□ -2.19
SDC1P18827 PRDX4P1-201ENST00000507189 574 ntBASIC1.34□□□□□ -2.19
SDC1P18827 RNU6-120P-201ENST00000516077 103 ntBASIC1.34□□□□□ -2.19
SDC1P18827 RNU6-548P-201ENST00000517083 115 ntBASIC1.34□□□□□ -2.19
SDC1P18827 AC024995.1-201ENST00000523014 93 ntBASIC1.34□□□□□ -2.19
SDC1P18827 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.34□□□□□ -2.19
SDC1P18827 MIR1244-1-201ENST00000612829 85 ntBASIC1.34□□□□□ -2.19
SDC1P18827 MIR1244-3-201ENST00000635744 85 ntBASIC1.34□□□□□ -2.19
SDC1P18827 MIR1244-2-201ENST00000636449 85 ntBASIC1.34□□□□□ -2.19
SDC1P18827 MIR1244-4-202ENST00000636813 85 ntBASIC1.34□□□□□ -2.19
SDC1P18827 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.34□□□□□ -2.19
SDC1P18827 AC100821.1-201ENST00000523153 2479 ntBASIC1.33□□□□□ -2.2
SDC1P18827 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SDC1P18827 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SDC1P18827 MIR126-201ENST00000362291 85 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNU6-1188P-201ENST00000363795 107 ntBASIC1.33□□□□□ -2.2
SDC1P18827 Y_RNA.358-201ENST00000365491 99 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNU6-203P-201ENST00000384038 104 ntBASIC1.33□□□□□ -2.2
SDC1P18827 Y_RNA.474-201ENST00000384341 102 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNA5SP109-201ENST00000391010 116 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNA5SP323-201ENST00000391094 133 ntBASIC1.33□□□□□ -2.2
SDC1P18827 Y_RNA.646-201ENST00000410980 101 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNU6-1304P-201ENST00000411374 106 ntBASIC1.33□□□□□ -2.2
SDC1P18827 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC1P18827 TOMM22P2-201ENST00000430735 237 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RPL23AP50-201ENST00000434149 455 ntBASIC1.33□□□□□ -2.2
SDC1P18827 AC005002.2-201ENST00000438228 269 ntBASIC1.33□□□□□ -2.2
SDC1P18827 SNRPGP13-201ENST00000442212 177 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RPS27P1-201ENST00000450552 247 ntBASIC1.33□□□□□ -2.2
SDC1P18827 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.33□□□□□ -2.2
SDC1P18827 snoU13.9-201ENST00000458927 103 ntBASIC1.33□□□□□ -2.2
SDC1P18827 snoU13.27-201ENST00000459278 104 ntBASIC1.33□□□□□ -2.2
SDC1P18827 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.33□□□□□ -2.2
SDC1P18827 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNU6-107P-201ENST00000516643 102 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNU6-307P-201ENST00000516743 106 ntBASIC1.33□□□□□ -2.2
SDC1P18827 RNU7-128P-201ENST00000517247 62 ntBASIC1.33□□□□□ -2.2
SDC1P18827 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC1P18827 AC022432.1-201ENST00000595739 310 ntBASIC1.33□□□□□ -2.2
SDC1P18827 AL355073.2-201ENST00000612106 557 ntBASIC1.33□□□□□ -2.2
SDC1P18827 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.33□□□□□ -2.2
SDC1P18827 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
SDC1P18827 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
SDC1P18827 RNU6-1266P-201ENST00000362794 105 ntBASIC1.32□□□□□ -2.2
SDC1P18827 RNU6-879P-201ENST00000364328 108 ntBASIC1.32□□□□□ -2.2
SDC1P18827 RNU6-99P-201ENST00000364721 107 ntBASIC1.32□□□□□ -2.2
SDC1P18827 RNU6-1145P-201ENST00000384246 107 ntBASIC1.32□□□□□ -2.2
SDC1P18827 RNU6-310P-201ENST00000384655 107 ntBASIC1.32□□□□□ -2.2
SDC1P18827 Y_RNA.595-201ENST00000410403 105 ntBASIC1.32□□□□□ -2.2
SDC1P18827 ELOCP21-201ENST00000412558 336 ntBASIC1.32□□□□□ -2.2
SDC1P18827 AL161935.2-201ENST00000414627 60 ntBASIC1.32□□□□□ -2.2
SDC1P18827 UQCRBP2-201ENST00000447827 297 ntBASIC1.32□□□□□ -2.2
SDC1P18827 RPS26P45-201ENST00000471748 340 ntBASIC1.32□□□□□ -2.2
SDC1P18827 AC022868.1-201ENST00000517767 391 ntBASIC1.32□□□□□ -2.2
SDC1P18827 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.32□□□□□ -2.2
SDC1P18827 APOOP3-201ENST00000536787 586 ntBASIC1.32□□□□□ -2.2
SDC1P18827 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.32□□□□□ -2.2
SDC1P18827 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.32□□□□□ -2.2
SDC1P18827 AL359075.3-201ENST00000613288 217 ntBASIC1.32□□□□□ -2.2
SDC1P18827 MIR7974-201ENST00000615835 79 ntBASIC1.32□□□□□ -2.2
SDC1P18827 MIR302D-201ENST00000362275 68 ntBASIC1.31□□□□□ -2.2
SDC1P18827 RNU6-318P-201ENST00000384283 103 ntBASIC1.31□□□□□ -2.2
SDC1P18827 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
SDC1P18827 RPL21P1-201ENST00000399532 476 ntBASIC1.31□□□□□ -2.2
SDC1P18827 RNU6-1186P-201ENST00000410429 97 ntBASIC1.31□□□□□ -2.2
SDC1P18827 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC1P18827 SNORD65B-201ENST00000459126 73 ntBASIC1.31□□□□□ -2.2
SDC1P18827 RNU1-142P-201ENST00000516682 145 ntBASIC1.31□□□□□ -2.2
SDC1P18827 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC1P18827 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
SDC1P18827 AC022217.4-201ENST00000604389 163 ntBASIC1.31□□□□□ -2.2
SDC1P18827 U6.73-201ENST00000619194 103 ntBASIC1.31□□□□□ -2.2
SDC1P18827 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SDC1P18827 RNU6-271P-201ENST00000363858 105 ntBASIC1.3□□□□□ -2.2
SDC1P18827 RNU6-1264P-201ENST00000383891 107 ntBASIC1.3□□□□□ -2.2
SDC1P18827 RNU6-890P-201ENST00000384121 107 ntBASIC1.3□□□□□ -2.2
SDC1P18827 SNORA67.5-201ENST00000391036 107 ntBASIC1.3□□□□□ -2.2
SDC1P18827 SNORA75.6-201ENST00000391318 127 ntBASIC1.3□□□□□ -2.2
SDC1P18827 FTH1P12-201ENST00000432137 551 ntBASIC1.3□□□□□ -2.2
SDC1P18827 UBE2V1P7-201ENST00000446395 340 ntBASIC1.3□□□□□ -2.2
SDC1P18827 HSPE1P24-201ENST00000450782 238 ntBASIC1.3□□□□□ -2.2
SDC1P18827 AC027419.1-201ENST00000522976 328 ntBASIC1.3□□□□□ -2.2
SDC1P18827 AL137100.2-201ENST00000555786 315 ntBASIC1.3□□□□□ -2.2
SDC1P18827 AL160236.1-201ENST00000556317 195 ntBASIC1.3□□□□□ -2.2
SDC1P18827 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.3□□□□□ -2.2
SDC1P18827 AC113139.1-201ENST00000605049 239 ntBASIC1.3□□□□□ -2.2
SDC1P18827 AC104260.1-201ENST00000616660 539 ntBASIC1.3□□□□□ -2.2
SDC1P18827 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
SDC1P18827 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
SDC1P18827 ZNF72P-201ENST00000425869 1908 ntBASIC1.29□□□□□ -2.2
SDC1P18827 ICE2P2-201ENST00000483823 2787 ntBASIC1.29□□□□□ -2.2
SDC1P18827 MIR194-1-201ENST00000384892 85 ntBASIC1.29□□□□□ -2.2
SDC1P18827 MIR758-201ENST00000390227 88 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms