Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A1P12109 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.15□□□□□ -1.91
COL6A1P12109 EIF4A1P12-201ENST00000551910 141 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.15□□□□□ -1.91
COL6A1P12109 AP001485.1-201ENST00000604799 199 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 SNORD11B-201ENST00000607707 90 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 AC004832.4-201ENST00000608952 331 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 AC108706.1-201ENST00000611053 297 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 AC005562.2-201ENST00000618264 111 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
COL6A1P12109 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL6A1P12109 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A1P12109 ZNF658B-202ENST00000615961 3375 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 RNU6-529P-201ENST00000363383 104 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 RNU6-324P-201ENST00000363957 106 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 RNU6-704P-201ENST00000364162 103 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 SNORD113-1-201ENST00000365321 69 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 Y_RNA.415-201ENST00000384012 112 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 SUMO1P4-201ENST00000429430 302 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 MICF-203ENST00000432679 129 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 RNA5SP148-201ENST00000516527 94 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 RNU6-344P-201ENST00000516635 111 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 MIR548AI-201ENST00000579940 88 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 TCL6_2.1-201ENST00000615162 119 ntBASIC3.14□□□□□ -1.91
COL6A1P12109 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
COL6A1P12109 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A1P12109 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
COL6A1P12109 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A1P12109 RNU6-653P-201ENST00000363074 106 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 RNU6-805P-201ENST00000365643 106 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 AC027124.2-201ENST00000428249 105 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.13□□□□□ -1.91
COL6A1P12109 AP002001.1-203ENST00000534002 267 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL6A1P12109 AC105245.1-201ENST00000581934 244 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 MTND1P7-201ENST00000632801 297 ntBASIC3.13□□□□□ -1.91
COL6A1P12109 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A1P12109 AP006437.1-201ENST00000641440 3685 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AL161431.1-201ENST00000618966 4205 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.40-201ENST00000362645 93 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 RNU6-655P-201ENST00000362858 107 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 U8.2-201ENST00000363156 134 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 RNU6-1210P-201ENST00000363775 107 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.291-201ENST00000364886 113 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.329-201ENST00000365209 107 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.398-201ENST00000383952 99 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.441-201ENST00000384123 112 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.571-201ENST00000384753 98 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 U3.40-201ENST00000408706 208 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 RNU6-1328P-201ENST00000410938 106 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 HMGN2P35-201ENST00000412164 270 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AIMP1P2-201ENST00000425294 312 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AC004386.2-201ENST00000441858 148 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.12□□□□□ -1.91
COL6A1P12109 HMGB3P3-201ENST00000510526 400 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 RNU6-346P-201ENST00000516288 111 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 RNU2-12P-201ENST00000517216 168 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 MTND5P41-201ENST00000517498 206 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.12□□□□□ -1.91
COL6A1P12109 MIR5006-201ENST00000583027 110 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AL008718.3-201ENST00000610217 321 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 AC068205.3-201ENST00000636385 468 ntBASIC3.12□□□□□ -1.91
COL6A1P12109 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
COL6A1P12109 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A1P12109 Y_RNA.7-201ENST00000362352 102 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 RNU4-15P-201ENST00000362613 141 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 RNU4-17P-201ENST00000365598 141 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 MIR186-201ENST00000384988 86 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 RNU6-220P-201ENST00000390919 107 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 RNU6-1135P-201ENST00000411083 103 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 RN7SL633P-201ENST00000488974 297 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 AC145146.1-201ENST00000496370 254 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.11□□□□□ -1.91
COL6A1P12109 AC068657.1-201ENST00000520807 306 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 AL713866.2-201ENST00000603579 219 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.11□□□□□ -1.91
COL6A1P12109 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.11□□□□□ -1.91
COL6A1P12109 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.11□□□□□ -1.91
COL6A1P12109 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A1P12109 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A1P12109 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A1P12109 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.1□□□□□ -1.91
COL6A1P12109 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A1P12109 MIR148B-201ENST00000362252 99 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 RNU1-57P-201ENST00000384491 166 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 MTATP6P29-201ENST00000415057 132 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 AC097463.2-201ENST00000421074 142 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 TOMM22P2-201ENST00000430735 237 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 snoU13.23-201ENST00000458863 104 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 AC146507.2-201ENST00000460608 476 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 AC080013.2-201ENST00000460866 323 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.1□□□□□ -1.91
COL6A1P12109 RNU6-436P-201ENST00000516171 114 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 RNU1-117P-201ENST00000517041 158 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 MIR5194-201ENST00000582634 120 ntBASIC3.1□□□□□ -1.91
COL6A1P12109 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A1P12109 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A1P12109 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms