Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
NKX6-3A6NJ46 snoU2-30.2-201ENST00000362805 70 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 RNU4-42P-201ENST00000364738 142 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 RNU6-1240P-201ENST00000365155 104 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 RNA5SP467-201ENST00000391274 118 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 AL117342.1-201ENST00000404861 406 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 RNA5SP100-201ENST00000410903 110 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 RNA5SP59-201ENST00000410922 110 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 ELOCP21-201ENST00000412558 336 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 AC099799.1-201ENST00000439809 192 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 RNU6-625P-201ENST00000459412 107 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 AC010409.1-201ENST00000487382 476 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 AC018448.1-201ENST00000552843 316 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 AC006600.1-201ENST00000572529 153 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 MIR3124-201ENST00000582636 67 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 U2.1-201ENST00000618978 145 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 MIR338-201ENST00000636369 67 ntBASIC1.61□□□□□ -2.15
NKX6-3A6NJ46 MIR369-201ENST00000362155 70 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNU6-1115P-201ENST00000362490 106 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNU6-1266P-201ENST00000362794 105 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.80-201ENST00000362996 102 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.287-201ENST00000364853 94 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNU6-439P-201ENST00000384188 106 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.485-201ENST00000384395 102 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.496-201ENST00000384444 101 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 MIR583-201ENST00000384846 75 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNA5SP212-201ENST00000391223 107 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNU2-7P-201ENST00000410794 178 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 AC008134.1-201ENST00000420943 193 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNU7-152P-201ENST00000458982 64 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RNU6-408P-201ENST00000515910 100 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 RN7SKP49-201ENST00000516675 260 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 SNORA31.17-201ENST00000516953 127 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 MIR5089-201ENST00000580047 84 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 AC092447.9-201ENST00000603395 144 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 C8orf59P2-201ENST00000603441 271 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 AC069114.2-201ENST00000604699 304 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 MIR7843-201ENST00000622274 79 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
NKX6-3A6NJ46 Y_RNA.509-201ENST00000384506 99 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 RNU6-308P-201ENST00000390957 107 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 RNA5SP323-201ENST00000391094 133 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 RNU2-20P-201ENST00000410425 191 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 RNU6-1186P-201ENST00000410429 97 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 AP002001.1-203ENST00000534002 267 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 AC084364.2-201ENST00000546924 395 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 HSBP1P1-201ENST00000555205 166 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 SUB1P4-201ENST00000566062 339 ntBASIC1.59□□□□□ -2.15
NKX6-3A6NJ46 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.5-201ENST00000362334 102 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 RNU6-112P-201ENST00000363599 104 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 U8.13-201ENST00000390842 128 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC245047.4-201ENST00000433189 144 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC005002.2-201ENST00000438228 269 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 snoU13.23-201ENST00000458863 104 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 RNU6-1146P-201ENST00000516282 102 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC023157.2-201ENST00000540596 141 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AL050343.2-201ENST00000607338 280 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC006157.1-201ENST00000611750 366 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 AC138305.3-201ENST00000624988 240 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 MTND4P29-201ENST00000503122 1372 ntBASIC1.58□□□□□ -2.16
NKX6-3A6NJ46 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 RNU6-961P-201ENST00000363893 105 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 RNU6-1264P-201ENST00000383891 107 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 RPS20P15-201ENST00000412792 311 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 RAB28P5-201ENST00000427490 651 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 TOMM22P2-201ENST00000430735 237 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 NDUFB4P10-201ENST00000452541 359 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 SNORD65B-201ENST00000459126 73 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 RNU6-1170P-201ENST00000515974 106 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 MIR2355-201ENST00000517199 87 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AC023442.1-201ENST00000531247 422 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 CBX3P4-201ENST00000538909 354 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AL442163.3-201ENST00000554110 156 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AC010615.1-201ENST00000594254 1764 ntBASIC1.57□□□□□ -2.16
NKX6-3A6NJ46 AC006026.1-201ENST00000444025 1803 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.197-201ENST00000364004 102 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 RNA5SP475-201ENST00000410568 110 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms