Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 UQCRHP3-201ENST00000451503 251 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 RNU6-56P-201ENST00000516986 93 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 RPL21P9-201ENST00000556149 474 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 AC009127.3-201ENST00000570531 403 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 AC005828.6-201ENST00000606610 232 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 SNORA38-201ENST00000363946 132 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 RNU6-740P-201ENST00000364734 105 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AC010154.1-201ENST00000425857 269 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AC245102.2-201ENST00000448956 180 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 RN7SL499P-201ENST00000481141 276 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 RN7SL633P-201ENST00000488974 297 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AC018868.1-201ENST00000491307 315 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AC010598.1-201ENST00000510378 103 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 NDUFA5P6-201ENST00000542110 379 ntBASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.92□□□□□ -1.94
TRIM39Q9HCM9 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AL159152.1-201ENST00000635019 2587 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 RNY1-201ENST00000364228 113 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 RNU6-1240P-201ENST00000365155 104 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 MIR873-201ENST00000401120 77 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 EEF1A1P41-201ENST00000414667 207 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 EDDM3CP-201ENST00000415977 425 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AC010531.2-201ENST00000465012 153 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 SCGB1D5P-201ENST00000515134 247 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 RN7SKP43-201ENST00000516173 320 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AC025647.1-201ENST00000517879 253 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AC009779.6-201ENST00000603972 165 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AC090115.4-201ENST00000609970 188 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 AC006435.5-201ENST00000624486 112 ntBASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
TRIM39Q9HCM9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
TRIM39Q9HCM9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
TRIM39Q9HCM9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.9□□□□□ -1.94
TRIM39Q9HCM9 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.99-201ENST00000363138 105 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.269-201ENST00000364685 89 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 SNORA9.2-201ENST00000365361 133 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 RNU6-1289P-201ENST00000384431 106 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 PRELID3BP1-201ENST00000457142 540 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 AC026271.5-201ENST00000577873 130 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 AC096644.4-201ENST00000563417 2912 ntBASIC2.9□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.82-201ENST00000363000 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.92-201ENST00000363043 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.235-201ENST00000364412 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.306-201ENST00000365015 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.312-201ENST00000365089 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.322-201ENST00000365151 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.361-201ENST00000365515 120 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 RNU6-662P-201ENST00000384253 104 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 MTCO1P44-201ENST00000441935 243 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 RNU7-26P-201ENST00000458980 63 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.650-201ENST00000459002 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.777-201ENST00000516982 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.771-201ENST00000598668 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.789-201ENST00000622480 102 ntBASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.200-201ENST00000364018 102 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 RNU6-200P-201ENST00000364743 107 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 SNORA20B-201ENST00000384220 132 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 RNU6-907P-201ENST00000390924 102 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 MIR1253-201ENST00000408273 105 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 RNU6-855P-201ENST00000410395 104 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 AL139132.1-201ENST00000431587 344 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 SNORD65B-201ENST00000459126 73 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 RNU6-1146P-201ENST00000516282 102 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 RPPH1-2P-201ENST00000516688 293 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.700-201ENST00000516806 100 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 RNU6-856P-201ENST00000516959 98 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 AL442067.1-201ENST00000613261 223 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 MIR6733-201ENST00000635723 61 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 Z82195.2-201ENST00000612348 18351 ntBASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
TRIM39Q9HCM9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.122-201ENST00000363331 96 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.217-201ENST00000364214 105 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms