Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 snoU18.1-201ENST00000629629 71 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.58□□□□□ -2
CLRN3Q8NCR9 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.58□□□□□ -2
CLRN3Q8NCR9 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
CLRN3Q8NCR9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 AL356292.1-201ENST00000283110 373 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 RNU6-801P-201ENST00000364087 105 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 RNU1-52P-201ENST00000384190 164 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 RNU1-13P-201ENST00000384499 162 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 MIR518C-201ENST00000384822 101 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 AL135790.2-201ENST00000437701 267 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 AP005660.1-201ENST00000522972 293 ntBASIC2.57□□□□□ -2
CLRN3Q8NCR9 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
CLRN3Q8NCR9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CLRN3Q8NCR9 RNA5SP119-201ENST00000362715 117 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 Y_RNA.76-201ENST00000362931 109 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 RNU6-899P-201ENST00000363947 107 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 RNU1-96P-201ENST00000364163 162 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 RNU6-117P-201ENST00000365415 107 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 RNU6-211P-201ENST00000384047 107 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 MIR181A2-201ENST00000384863 110 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 MIR518A2-201ENST00000384966 87 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 RNU6-763P-201ENST00000390865 106 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 BX510359.4-201ENST00000423750 193 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 AL117339.2-201ENST00000430475 180 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 HSPE1P21-201ENST00000438283 308 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 AC024995.1-201ENST00000523014 93 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.56□□□□□ -2
CLRN3Q8NCR9 AL161756.2-201ENST00000604597 246 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 SNORD14A-201ENST00000606526 91 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 AL162274.2-201ENST00000614406 332 ntBASIC2.56□□□□□ -2
CLRN3Q8NCR9 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CLRN3Q8NCR9 Y_RNA.200-201ENST00000364018 102 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 RNU4-13P-201ENST00000364019 141 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 Y_RNA.292-201ENST00000364904 97 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 RNU6-376P-201ENST00000384731 106 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 RNA5SP323-201ENST00000391094 133 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 HMGN2P39-201ENST00000398005 273 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 MIR1298-201ENST00000408783 112 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 AL451074.5-201ENST00000415894 435 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.55□□□□□ -2
CLRN3Q8NCR9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.55□□□□□ -2
CLRN3Q8NCR9 RN7SL297P-201ENST00000483161 293 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 FCF1P8-201ENST00000510322 597 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 RNU7-99P-201ENST00000516271 62 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 RNU1-142P-201ENST00000516682 145 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 RNU7-116P-201ENST00000516940 62 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 AC005972.2-201ENST00000604690 348 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 AC004832.4-201ENST00000608952 331 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 uc_338.1-201ENST00000612113 180 ntBASIC2.55□□□□□ -2
CLRN3Q8NCR9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.54□□□□□ -2
CLRN3Q8NCR9 SNORA25.6-201ENST00000364121 118 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 RNU6-200P-201ENST00000364743 107 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 SNORD116-13-201ENST00000384408 92 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 SNORA26.5-201ENST00000391215 123 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AL117342.1-201ENST00000404861 406 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 RNU6-1186P-201ENST00000410429 97 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC007064.1-201ENST00000412238 351 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 EBAG9P1-201ENST00000418955 543 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC004975.1-201ENST00000428733 208 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.54□□□□□ -2
CLRN3Q8NCR9 Y_RNA.637-201ENST00000459424 114 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AL133162.1-201ENST00000463228 453 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.54□□□□□ -2
CLRN3Q8NCR9 Y_RNA.700-201ENST00000516806 100 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.54□□□□□ -2
CLRN3Q8NCR9 LARP7P3-201ENST00000579888 337 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AL008718.3-201ENST00000610217 321 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC013791.1-201ENST00000616619 62 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC068647.2-201ENST00000637380 353 ntBASIC2.54□□□□□ -2
CLRN3Q8NCR9 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CLRN3Q8NCR9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.54□□□□□ -2
CLRN3Q8NCR9 AC245060.5-201ENST00000610778 3293 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLRN3Q8NCR9 RNU6-862P-201ENST00000362804 105 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 RNY4P28-201ENST00000365281 93 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 RNU6-1323P-201ENST00000384025 107 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 RNU11-3P-201ENST00000391111 133 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AL355497.1-201ENST00000406262 551 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 RNU6-651P-201ENST00000411040 105 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AL139156.1-201ENST00000412785 841 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.53□□□□□ -2
CLRN3Q8NCR9 AC091390.1-201ENST00000433904 331 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AL162725.1-201ENST00000435405 301 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AC104332.1-201ENST00000440471 797 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.53□□□□□ -2
CLRN3Q8NCR9 AC107016.2-201ENST00000547968 190 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 RPL12P50-201ENST00000603116 116 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 U3.45-201ENST00000607547 219 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 MIR548AY-201ENST00000617669 107 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AC010297.1-201ENST00000623948 149 ntBASIC2.53□□□□□ -2
CLRN3Q8NCR9 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLRN3Q8NCR9 Y_RNA.83-201ENST00000363005 113 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms