Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.19□□□□□ -1.9
ATG4DQ86TL0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ATG4DQ86TL0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ATG4DQ86TL0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ATG4DQ86TL0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4DQ86TL0 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ATG4DQ86TL0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4DQ86TL0 SNORA63.5-201ENST00000363548 123 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 MIR7-3-201ENST00000384898 110 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 MIR183-201ENST00000384958 110 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RNA5SP129-201ENST00000410276 118 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RNU2-37P-201ENST00000410695 177 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RNA5SP127-201ENST00000411051 133 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 CYCSP4-201ENST00000429682 331 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 ARF4P2-201ENST00000430209 526 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 AC010531.2-201ENST00000465012 153 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 SNRPGP3-201ENST00000469405 227 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RPL39P34-201ENST00000477141 156 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RN7SL293P-201ENST00000481765 281 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 AC083906.5-201ENST00000503722 328 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RNA5SP20-201ENST00000515976 84 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RNU6-109P-201ENST00000516364 107 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 RNU6-184P-201ENST00000516514 107 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.18□□□□□ -1.9
ATG4DQ86TL0 AC011602.1-201ENST00000546484 331 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 MIR5047-201ENST00000579212 100 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 AC097639.2-201ENST00000603159 172 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 HSPE1P7-201ENST00000604681 321 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 U7.8-201ENST00000619968 63 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 U4.6-201ENST00000621618 127 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 AL035470.1-201ENST00000622571 220 ntBASIC3.18□□□□□ -1.9
ATG4DQ86TL0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4DQ86TL0 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4DQ86TL0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
ATG4DQ86TL0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AL161912.2-201ENST00000565707 3007 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC058791.1-201ENST00000608412 3198 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC000403.1-201ENST00000613696 3585 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RNU6-50P-201ENST00000362356 103 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RNU4-13P-201ENST00000364019 141 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RNU6-748P-201ENST00000384648 107 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 MIR570-201ENST00000384917 97 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 MIR624-201ENST00000385217 97 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AF228730.3-201ENST00000436691 102 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 MTATP6P21-201ENST00000440681 189 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 PRSS3P4-201ENST00000453323 162 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RNU7-57P-201ENST00000459540 60 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RNA5SP281-201ENST00000516504 135 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 SNORA70.19-201ENST00000516717 90 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RNU6-1098P-201ENST00000516772 96 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RN7SKP289-201ENST00000517244 295 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC025647.1-201ENST00000517879 253 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 MIR4425-201ENST00000580572 84 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 MIR3944-201ENST00000581277 108 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 U3.45-201ENST00000607547 219 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC019176.2-201ENST00000611579 315 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AL442128.1-201ENST00000615151 90 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 U6.98-201ENST00000637157 84 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 AC091152.2-201ENST00000591628 2569 ntBASIC3.17□□□□□ -1.9
ATG4DQ86TL0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ATG4DQ86TL0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ATG4DQ86TL0 RNU6-655P-201ENST00000362858 107 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 RNU6-1210P-201ENST00000363775 107 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 RNU6-271P-201ENST00000363858 105 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 RNU2-49P-201ENST00000410666 184 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.16□□□□□ -1.9
ATG4DQ86TL0 U3.44-201ENST00000458938 192 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 snoU13.28-201ENST00000459235 104 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 AC078918.1-201ENST00000498515 228 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 RN7SKP12-201ENST00000516275 143 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 RNU6-365P-201ENST00000517113 106 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 AC007751.1-201ENST00000529260 376 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.16□□□□□ -1.9
ATG4DQ86TL0 AC015720.1-201ENST00000565251 277 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 Pinc.1-201ENST00000616452 154 ntBASIC3.16□□□□□ -1.9
ATG4DQ86TL0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
ATG4DQ86TL0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ATG4DQ86TL0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.16□□□□□ -1.9
ATG4DQ86TL0 AC007496.3-201ENST00000624987 3443 ntBASIC3.15□□□□□ -1.9
ATG4DQ86TL0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.15□□□□□ -1.9
ATG4DQ86TL0 Y_RNA.203-201ENST00000364106 102 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 MIR218-2-201ENST00000385006 110 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.15□□□□□ -1.91
ATG4DQ86TL0 AC008155.2-201ENST00000464337 397 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 AC010598.1-201ENST00000510378 103 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 RNU5F-4P-201ENST00000516581 114 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 HIGD1AP1-201ENST00000550979 275 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 MIR3129-201ENST00000581095 76 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 AC007179.3-201ENST00000604976 235 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 RNU6-91P-201ENST00000607774 107 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 MIR7851-201ENST00000610611 160 ntBASIC3.15□□□□□ -1.91
ATG4DQ86TL0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms