Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.04□□□□□ -1.92
USP53Q70EK8 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP53Q70EK8 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
USP53Q70EK8 RNU6-682P-201ENST00000363843 106 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RNU6-438P-201ENST00000365561 103 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RNU6-1235P-201ENST00000384559 107 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RNU6-918P-201ENST00000391219 106 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RNU2-63P-201ENST00000410792 194 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 AC003685.2-201ENST00000422795 395 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.03□□□□□ -1.92
USP53Q70EK8 RNU6-498P-201ENST00000459468 107 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RNA5SP385-201ENST00000515947 110 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RNA5SP490-201ENST00000517141 136 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 AL365434.2-201ENST00000607979 234 ntBASIC3.03□□□□□ -1.92
USP53Q70EK8 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.03□□□□□ -1.92
USP53Q70EK8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.93
USP53Q70EK8 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USP53Q70EK8 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.02□□□□□ -1.93
USP53Q70EK8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
USP53Q70EK8 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
USP53Q70EK8 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
USP53Q70EK8 AL159152.1-201ENST00000635019 2587 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RNA5SP383-201ENST00000362934 120 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 Y_RNA.310-201ENST00000365063 113 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 Y_RNA.435-201ENST00000384095 112 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 Y_RNA.456-201ENST00000384232 111 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 SNORD14D-201ENST00000384390 87 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
USP53Q70EK8 SNORA26.5-201ENST00000391215 123 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 MIR873-201ENST00000401120 77 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 AL355796.1-201ENST00000406706 323 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RNU6-855P-201ENST00000410395 104 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RNU2-48P-201ENST00000410694 191 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RNU6-57P-201ENST00000411348 103 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 COX6CP10-201ENST00000416832 224 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 AC016717.1-201ENST00000448918 286 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RPL23AP7-203ENST00000449021 469 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.02□□□□□ -1.93
USP53Q70EK8 RNY3P16-201ENST00000516338 101 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RNU6-948P-201ENST00000516374 107 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 RNU2-34P-201ENST00000516534 121 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 SNORA64.4-201ENST00000516632 81 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 SCARNA20.6-201ENST00000517251 106 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.02□□□□□ -1.93
USP53Q70EK8 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.02□□□□□ -1.93
USP53Q70EK8 MIR4506-201ENST00000584693 77 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.02□□□□□ -1.93
USP53Q70EK8 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.02□□□□□ -1.93
USP53Q70EK8 AC025754.2-201ENST00000606491 432 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.02□□□□□ -1.93
USP53Q70EK8 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP53Q70EK8 AC138915.1-201ENST00000565427 1685 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP53Q70EK8 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.01□□□□□ -1.93
USP53Q70EK8 MIR148B-201ENST00000362252 99 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 SNORA71.1-201ENST00000364523 117 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 RNU6-923P-201ENST00000364753 107 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 Y_RNA.308-201ENST00000365043 101 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 SNORA72.4-201ENST00000384174 132 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 SNORA20B-201ENST00000384220 132 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AL121890.1-201ENST00000435457 205 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 U8.19-201ENST00000459095 133 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.01□□□□□ -1.93
USP53Q70EK8 AC091826.1-201ENST00000514065 313 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AC022559.1-201ENST00000520905 205 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 PRELID2P1-201ENST00000552837 301 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.01□□□□□ -1.93
USP53Q70EK8 MIR4308-201ENST00000580634 81 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AC090115.4-201ENST00000609970 188 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AC013412.1-201ENST00000610687 192 ntBASIC3.01□□□□□ -1.93
USP53Q70EK8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.01□□□□□ -1.93
USP53Q70EK8 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3□□□□□ -1.93
USP53Q70EK8 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP53Q70EK8 Y_RNA.287-201ENST00000364853 94 ntBASIC3□□□□□ -1.93
USP53Q70EK8 Y_RNA.341-201ENST00000365341 102 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RNU6-418P-201ENST00000384035 107 ntBASIC3□□□□□ -1.93
USP53Q70EK8 SNORD67-201ENST00000390833 111 ntBASIC3□□□□□ -1.93
USP53Q70EK8 SNORA40.19-201ENST00000390846 128 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RN7SKP220-201ENST00000410611 288 ntBASIC3□□□□□ -1.93
USP53Q70EK8 AL513477.1-202ENST00000417061 214 ntBASIC3□□□□□ -1.93
USP53Q70EK8 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3□□□□□ -1.93
USP53Q70EK8 SNORD65B-201ENST00000459126 73 ntBASIC3□□□□□ -1.93
USP53Q70EK8 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3□□□□□ -1.93
USP53Q70EK8 TRAPPC2P7-201ENST00000509650 231 ntBASIC3□□□□□ -1.93
USP53Q70EK8 AC010598.1-201ENST00000510378 103 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RNA5SP217-201ENST00000515959 91 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RNU1-143P-201ENST00000516296 146 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RNU6-861P-201ENST00000516745 106 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RN7SKP282-201ENST00000516824 299 ntBASIC3□□□□□ -1.93
USP53Q70EK8 AC025647.1-201ENST00000517879 253 ntBASIC3□□□□□ -1.93
USP53Q70EK8 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3□□□□□ -1.93
USP53Q70EK8 AL355297.2-201ENST00000604792 129 ntBASIC3□□□□□ -1.93
USP53Q70EK8 U1.23-201ENST00000610293 146 ntBASIC3□□□□□ -1.93
USP53Q70EK8 RNU1-68P-201ENST00000615382 146 ntBASIC3□□□□□ -1.93
USP53Q70EK8 MIR6715A-201ENST00000615929 79 ntBASIC3□□□□□ -1.93
USP53Q70EK8 U1.39-201ENST00000621562 146 ntBASIC3□□□□□ -1.93
USP53Q70EK8 MIR622-201ENST00000638396 96 ntBASIC3□□□□□ -1.93
USP53Q70EK8 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
USP53Q70EK8 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 184.6 ms