Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RN7SKP132-201ENST00000516001 208 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 RNU6-928P-201ENST00000516876 104 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 ACA59.2-201ENST00000517061 156 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC006199.1-201ENST00000548728 219 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.99□□□□□ -1.93
USP39Q53GS9 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.99□□□□□ -1.93
USP39Q53GS9 CYP4A27P-201ENST00000567218 190 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC009127.3-201ENST00000570531 403 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.99□□□□□ -1.93
USP39Q53GS9 MIR3945-201ENST00000581853 98 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC104984.5-201ENST00000586878 94 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC008739.2-201ENST00000597006 317 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.99□□□□□ -1.93
USP39Q53GS9 AL078604.3-201ENST00000615580 211 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
USP39Q53GS9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.98□□□□□ -1.93
USP39Q53GS9 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.98□□□□□ -1.93
USP39Q53GS9 SNORD56.5-201ENST00000364281 72 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 SNORA26.5-201ENST00000391215 123 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.98□□□□□ -1.93
USP39Q53GS9 RNA5SP475-201ENST00000410568 110 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 EBAG9P1-201ENST00000418955 543 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 AC099548.1-201ENST00000421443 426 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 MTND4LP9-201ENST00000427694 174 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 AC087499.2-201ENST00000432861 149 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 UBBP3-201ENST00000445497 241 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 AC103975.1-201ENST00000482506 483 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 Y_RNA.797-201ENST00000515977 94 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 NACAP3-201ENST00000552100 481 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 MIR4431-201ENST00000579990 94 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 SNORD98-201ENST00000636377 67 ntBASIC2.98□□□□□ -1.93
USP39Q53GS9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
USP39Q53GS9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
USP39Q53GS9 AC062016.1-201ENST00000355719 319 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNU1-105P-201ENST00000363470 161 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNU4-10P-201ENST00000364383 140 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 Y_RNA.415-201ENST00000384012 112 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 SNORA40-201ENST00000388090 126 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNU6-578P-201ENST00000390980 103 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 AC004866.1-201ENST00000411748 78 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 AL513477.1-202ENST00000417061 214 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 AL137159.1-201ENST00000452808 512 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNU5F-2P-201ENST00000516066 82 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNU6-971P-201ENST00000516920 106 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 RNA5SP380-201ENST00000517190 98 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 AC026241.1-201ENST00000517873 2142 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.97□□□□□ -1.93
USP39Q53GS9 AC021269.2-201ENST00000532318 330 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.97□□□□□ -1.93
USP39Q53GS9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.97□□□□□ -1.93
USP39Q53GS9 MIR3658-201ENST00000636291 56 ntBASIC2.97□□□□□ -1.93
USP39Q53GS9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP39Q53GS9 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP39Q53GS9 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.97□□□□□ -1.93
USP39Q53GS9 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP39Q53GS9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.97□□□□□ -1.93
USP39Q53GS9 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP39Q53GS9 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.93
USP39Q53GS9 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.96□□□□□ -1.94
USP39Q53GS9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP39Q53GS9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP39Q53GS9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP39Q53GS9 RNU4-82P-201ENST00000362443 140 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 Y_RNA.71-201ENST00000362892 104 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 Y_RNA.127-201ENST00000363386 109 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 Y_RNA.273-201ENST00000364703 102 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 RNU6-44P-201ENST00000384045 107 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 SNORA18.3-201ENST00000384122 132 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 MIR208B-201ENST00000401172 77 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 CBX3P9-201ENST00000402326 552 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 FO393413.1-201ENST00000402892 195 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 RPS20P10-201ENST00000451209 253 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 snoU13.28-201ENST00000459235 104 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 RN7SL20P-201ENST00000488827 297 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 AIG1P1-201ENST00000503376 148 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 RN7SKP164-201ENST00000516138 266 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 RN7SKP43-201ENST00000516173 320 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 AC136628.3-201ENST00000521868 290 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 AC022616.8-201ENST00000533569 253 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 MIR4506-201ENST00000584693 77 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 AC069294.1-201ENST00000608397 350 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 AC013791.1-201ENST00000616619 62 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 AC096644.4-201ENST00000563417 2912 ntBASIC2.96□□□□□ -1.94
USP39Q53GS9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP39Q53GS9 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.96□□□□□ -1.94
USP39Q53GS9 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.96□□□□□ -1.94
USP39Q53GS9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.95□□□□□ -1.94
USP39Q53GS9 AC002543.1-201ENST00000299783 1954 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 RNU6-899P-201ENST00000363947 107 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 SNORD115-30-201ENST00000364117 82 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 U8.9-201ENST00000365667 134 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 RNU6-1264P-201ENST00000383891 107 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 Y_RNA.572-201ENST00000384757 98 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 MIR196B-201ENST00000384852 84 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 MIR626-201ENST00000385032 94 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 RNA5SP201-201ENST00000410316 124 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 CYCSP48-201ENST00000417124 323 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 AL365496.1-201ENST00000426885 215 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms