Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SNORA20-201ENST00000384662 132 ntBASIC3.15□□□□□ -1.91
RNF4P78317 MIR34B-201ENST00000385076 84 ntBASIC3.15□□□□□ -1.91
RNF4P78317 FO393413.1-201ENST00000402892 195 ntBASIC3.15□□□□□ -1.91
RNF4P78317 U6atac.2-201ENST00000408644 118 ntBASIC3.15□□□□□ -1.91
RNF4P78317 AC126124.2-201ENST00000413542 321 ntBASIC3.15□□□□□ -1.91
RNF4P78317 AC016909.1-201ENST00000415916 166 ntBASIC3.15□□□□□ -1.91
RNF4P78317 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.15□□□□□ -1.91
RNF4P78317 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.15□□□□□ -1.91
RNF4P78317 AC002075.2-201ENST00000425207 252 ntBASIC3.15□□□□□ -1.91
RNF4P78317 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.15□□□□□ -1.91
RNF4P78317 HMGN2P18-201ENST00000450680 270 ntBASIC3.15□□□□□ -1.91
RNF4P78317 RPS29P12-201ENST00000460178 152 ntBASIC3.15□□□□□ -1.91
RNF4P78317 RPL23AP54-201ENST00000495129 419 ntBASIC3.15□□□□□ -1.91
RNF4P78317 RNU6-948P-201ENST00000516374 107 ntBASIC3.15□□□□□ -1.91
RNF4P78317 PRELID2P1-201ENST00000552837 301 ntBASIC3.15□□□□□ -1.91
RNF4P78317 AC127455.1-201ENST00000565496 145 ntBASIC3.15□□□□□ -1.91
RNF4P78317 POLR3GP1-201ENST00000594073 261 ntBASIC3.15□□□□□ -1.91
RNF4P78317 AP003357.1-201ENST00000604497 148 ntBASIC3.15□□□□□ -1.91
RNF4P78317 MIR7157-201ENST00000635801 60 ntBASIC3.15□□□□□ -1.91
RNF4P78317 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
RNF4P78317 AC080128.1-201ENST00000474389 1917 ntBASIC3.15□□□□□ -1.91
RNF4P78317 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
RNF4P78317 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.15□□□□□ -1.91
RNF4P78317 AP003122.5-201ENST00000527668 3766 ntBASIC3.14□□□□□ -1.91
RNF4P78317 RNU6-546P-201ENST00000383991 107 ntBASIC3.14□□□□□ -1.91
RNF4P78317 RNU6-643P-201ENST00000384018 107 ntBASIC3.14□□□□□ -1.91
RNF4P78317 RNU6-22P-201ENST00000384355 107 ntBASIC3.14□□□□□ -1.91
RNF4P78317 RNU2-51P-201ENST00000410708 197 ntBASIC3.14□□□□□ -1.91
RNF4P78317 MTATP6P29-201ENST00000415057 132 ntBASIC3.14□□□□□ -1.91
RNF4P78317 AL135786.1-201ENST00000415892 214 ntBASIC3.14□□□□□ -1.91
RNF4P78317 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.14□□□□□ -1.91
RNF4P78317 MICF-203ENST00000432679 129 ntBASIC3.14□□□□□ -1.91
RNF4P78317 RPL23AP67-201ENST00000465341 474 ntBASIC3.14□□□□□ -1.91
RNF4P78317 CKS1BP2-201ENST00000497342 240 ntBASIC3.14□□□□□ -1.91
RNF4P78317 SEM1P1-201ENST00000506694 209 ntBASIC3.14□□□□□ -1.91
RNF4P78317 RNA5SP385-201ENST00000515947 110 ntBASIC3.14□□□□□ -1.91
RNF4P78317 SNORA31.26-201ENST00000517250 137 ntBASIC3.14□□□□□ -1.91
RNF4P78317 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.14□□□□□ -1.91
RNF4P78317 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.14□□□□□ -1.91
RNF4P78317 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.14□□□□□ -1.91
RNF4P78317 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
RNF4P78317 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
RNF4P78317 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.14□□□□□ -1.91
RNF4P78317 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
RNF4P78317 AC092435.3-201ENST00000565538 3654 ntBASIC3.13□□□□□ -1.91
RNF4P78317 RNU6-199P-201ENST00000362954 107 ntBASIC3.13□□□□□ -1.91
RNF4P78317 RNU1-23P-201ENST00000363361 144 ntBASIC3.13□□□□□ -1.91
RNF4P78317 SNORD46.1-201ENST00000364139 104 ntBASIC3.13□□□□□ -1.91
RNF4P78317 RNU6-1235P-201ENST00000384559 107 ntBASIC3.13□□□□□ -1.91
RNF4P78317 RNU6-136P-201ENST00000384663 107 ntBASIC3.13□□□□□ -1.91
RNF4P78317 MIR181A2-201ENST00000384863 110 ntBASIC3.13□□□□□ -1.91
RNF4P78317 RNU6-498P-201ENST00000459468 107 ntBASIC3.13□□□□□ -1.91
RNF4P78317 RPS27P22-201ENST00000478056 241 ntBASIC3.13□□□□□ -1.91
RNF4P78317 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.13□□□□□ -1.91
RNF4P78317 MIR4506-201ENST00000584693 77 ntBASIC3.13□□□□□ -1.91
RNF4P78317 AC005972.2-201ENST00000604690 348 ntBASIC3.13□□□□□ -1.91
RNF4P78317 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.13□□□□□ -1.91
RNF4P78317 AL159152.1-201ENST00000635019 2587 ntBASIC3.12□□□□□ -1.91
RNF4P78317 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
RNF4P78317 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
RNF4P78317 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
RNF4P78317 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
RNF4P78317 RNA5SP267-201ENST00000364893 126 ntBASIC3.12□□□□□ -1.91
RNF4P78317 Y_RNA.337-201ENST00000365312 102 ntBASIC3.12□□□□□ -1.91
RNF4P78317 RNU6-1323P-201ENST00000384025 107 ntBASIC3.12□□□□□ -1.91
RNF4P78317 RNVU1-14-201ENST00000384770 164 ntBASIC3.12□□□□□ -1.91
RNF4P78317 RNU6-1228P-201ENST00000391014 107 ntBASIC3.12□□□□□ -1.91
RNF4P78317 MIR513C-201ENST00000401352 84 ntBASIC3.12□□□□□ -1.91
RNF4P78317 RNA5SP511-201ENST00000410487 115 ntBASIC3.12□□□□□ -1.91
RNF4P78317 AC008134.1-201ENST00000420943 193 ntBASIC3.12□□□□□ -1.91
RNF4P78317 Z82209.1-201ENST00000422141 2135 ntBASIC3.12□□□□□ -1.91
RNF4P78317 AC009969.1-201ENST00000438726 172 ntBASIC3.12□□□□□ -1.91
RNF4P78317 AC010531.2-201ENST00000465012 153 ntBASIC3.12□□□□□ -1.91
RNF4P78317 AC023141.11-201ENST00000508864 202 ntBASIC3.12□□□□□ -1.91
RNF4P78317 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.12□□□□□ -1.91
RNF4P78317 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.12□□□□□ -1.91
RNF4P78317 MIR5688-201ENST00000580619 83 ntBASIC3.12□□□□□ -1.91
RNF4P78317 MIR4276-201ENST00000584832 70 ntBASIC3.12□□□□□ -1.91
RNF4P78317 AL031274.2-201ENST00000599419 203 ntBASIC3.12□□□□□ -1.91
RNF4P78317 AC010332.2-201ENST00000613083 1904 ntBASIC3.12□□□□□ -1.91
RNF4P78317 ZNF702P-202ENST00000434269 1966 ntBASIC3.12□□□□□ -1.91
RNF4P78317 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
RNF4P78317 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
RNF4P78317 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
RNF4P78317 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
RNF4P78317 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
RNF4P78317 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
RNF4P78317 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
RNF4P78317 Z83843.1-201ENST00000604070 3685 ntBASIC3.11□□□□□ -1.91
RNF4P78317 RNU6-728P-201ENST00000365375 104 ntBASIC3.11□□□□□ -1.91
RNF4P78317 SNORD37.2-201ENST00000391075 66 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AL031121.1-201ENST00000406553 254 ntBASIC3.11□□□□□ -1.91
RNF4P78317 Y_RNA.622-201ENST00000411091 108 ntBASIC3.11□□□□□ -1.91
RNF4P78317 RPL30P13-201ENST00000418873 348 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.11□□□□□ -1.91
RNF4P78317 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.11□□□□□ -1.91
RNF4P78317 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.11□□□□□ -1.91
RNF4P78317 RNU6-437P-201ENST00000459408 95 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.11□□□□□ -1.91
RNF4P78317 RNU6-991P-201ENST00000516168 107 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms