Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 HMGN2P39-201ENST00000398005 273 ntBASIC1.91□□□□□ -2.1
CDH11P55287 SNORD12B-201ENST00000410433 91 ntBASIC1.91□□□□□ -2.1
CDH11P55287 MTCO3P19-201ENST00000415864 321 ntBASIC1.91□□□□□ -2.1
CDH11P55287 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.91□□□□□ -2.1
CDH11P55287 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.91□□□□□ -2.1
CDH11P55287 PCNPP5-201ENST00000452246 481 ntBASIC1.91□□□□□ -2.1
CDH11P55287 RNU1-117P-201ENST00000517041 158 ntBASIC1.91□□□□□ -2.1
CDH11P55287 RNU6-1137P-201ENST00000517073 99 ntBASIC1.91□□□□□ -2.1
CDH11P55287 SNORA31.25-201ENST00000517242 134 ntBASIC1.91□□□□□ -2.1
CDH11P55287 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.91□□□□□ -2.1
CDH11P55287 AC026271.5-201ENST00000577873 130 ntBASIC1.91□□□□□ -2.1
CDH11P55287 AL031274.2-201ENST00000599419 203 ntBASIC1.91□□□□□ -2.1
CDH11P55287 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.91□□□□□ -2.1
CDH11P55287 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.91□□□□□ -2.1
CDH11P55287 U6.92-201ENST00000636464 89 ntBASIC1.91□□□□□ -2.1
CDH11P55287 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
CDH11P55287 LINC02555-201ENST00000563933 1951 ntBASIC1.9□□□□□ -2.1
CDH11P55287 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.9□□□□□ -2.11
CDH11P55287 MIR410-201ENST00000362222 80 ntBASIC1.9□□□□□ -2.11
CDH11P55287 Y_RNA.158-201ENST00000363651 101 ntBASIC1.9□□□□□ -2.11
CDH11P55287 RNU6-1305P-201ENST00000364353 104 ntBASIC1.9□□□□□ -2.11
CDH11P55287 RNU6-438P-201ENST00000365561 103 ntBASIC1.9□□□□□ -2.11
CDH11P55287 RNU6-418P-201ENST00000384035 107 ntBASIC1.9□□□□□ -2.11
CDH11P55287 RNU6-1011P-201ENST00000384668 107 ntBASIC1.9□□□□□ -2.11
CDH11P55287 MIR504-201ENST00000385065 83 ntBASIC1.9□□□□□ -2.11
CDH11P55287 MRPL35P1-201ENST00000404272 572 ntBASIC1.9□□□□□ -2.11
CDH11P55287 MIR1283-2-201ENST00000408621 87 ntBASIC1.9□□□□□ -2.11
CDH11P55287 Y_RNA.595-201ENST00000410403 105 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AL357134.1-201ENST00000445848 426 ntBASIC1.9□□□□□ -2.11
CDH11P55287 RNU1-131P-201ENST00000458943 161 ntBASIC1.9□□□□□ -2.11
CDH11P55287 snoU13.15-201ENST00000459407 104 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AC074133.1-201ENST00000515696 183 ntBASIC1.9□□□□□ -2.11
CDH11P55287 SCARNA16.3-201ENST00000516595 184 ntBASIC1.9□□□□□ -2.11
CDH11P55287 MIR514B-201ENST00000516774 80 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AP003072.1-201ENST00000531740 145 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AP002001.1-203ENST00000534002 267 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.9□□□□□ -2.11
CDH11P55287 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.9□□□□□ -2.11
CDH11P55287 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.9□□□□□ -2.11
CDH11P55287 AC022432.1-201ENST00000595739 310 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.9□□□□□ -2.11
CDH11P55287 AC010205.1-201ENST00000616668 449 ntBASIC1.9□□□□□ -2.11
CDH11P55287 AC131280.1-202ENST00000624067 4211 ntBASIC1.9□□□□□ -2.11
CDH11P55287 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CDH11P55287 AC009487.4-201ENST00000624969 3585 ntBASIC1.89□□□□□ -2.11
CDH11P55287 U3.8-201ENST00000363675 217 ntBASIC1.89□□□□□ -2.11
CDH11P55287 Y_RNA.202-201ENST00000364083 110 ntBASIC1.89□□□□□ -2.11
CDH11P55287 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CDH11P55287 RNU6-823P-201ENST00000391042 103 ntBASIC1.89□□□□□ -2.11
CDH11P55287 AC139712.2-201ENST00000424302 339 ntBASIC1.89□□□□□ -2.11
CDH11P55287 AC016717.1-201ENST00000448918 286 ntBASIC1.89□□□□□ -2.11
CDH11P55287 SNORA40.9-201ENST00000515895 93 ntBASIC1.89□□□□□ -2.11
CDH11P55287 RNU7-193P-201ENST00000516723 65 ntBASIC1.89□□□□□ -2.11
CDH11P55287 RNA5SP364-201ENST00000516938 78 ntBASIC1.89□□□□□ -2.11
CDH11P55287 AC018448.1-201ENST00000552843 316 ntBASIC1.89□□□□□ -2.11
CDH11P55287 MIR3169-201ENST00000578032 83 ntBASIC1.89□□□□□ -2.11
CDH11P55287 MIR4448-201ENST00000584360 86 ntBASIC1.89□□□□□ -2.11
CDH11P55287 MIR4753-201ENST00000585119 83 ntBASIC1.89□□□□□ -2.11
CDH11P55287 AC008749.1-201ENST00000597650 306 ntBASIC1.89□□□□□ -2.11
CDH11P55287 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.89□□□□□ -2.11
CDH11P55287 AL162373.1-201ENST00000620433 407 ntBASIC1.89□□□□□ -2.11
CDH11P55287 MIR7843-201ENST00000622274 79 ntBASIC1.89□□□□□ -2.11
CDH11P55287 AL078596.1-201ENST00000624856 447 ntBASIC1.89□□□□□ -2.11
CDH11P55287 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.89□□□□□ -2.11
CDH11P55287 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.88□□□□□ -2.11
CDH11P55287 RNU6-961P-201ENST00000363893 105 ntBASIC1.88□□□□□ -2.11
CDH11P55287 Y_RNA.458-201ENST00000384240 102 ntBASIC1.88□□□□□ -2.11
CDH11P55287 RNU6-1235P-201ENST00000384559 107 ntBASIC1.88□□□□□ -2.11
CDH11P55287 MIR518A2-201ENST00000384966 87 ntBASIC1.88□□□□□ -2.11
CDH11P55287 MIR628-201ENST00000385229 95 ntBASIC1.88□□□□□ -2.11
CDH11P55287 MIR29C-201ENST00000385231 88 ntBASIC1.88□□□□□ -2.11
CDH11P55287 SNORD78.2-201ENST00000391076 69 ntBASIC1.88□□□□□ -2.11
CDH11P55287 SNORD23.1-201ENST00000408212 104 ntBASIC1.88□□□□□ -2.11
CDH11P55287 MIR1185-2-201ENST00000408687 86 ntBASIC1.88□□□□□ -2.11
CDH11P55287 SDAD1P3-201ENST00000427380 333 ntBASIC1.88□□□□□ -2.11
CDH11P55287 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.88□□□□□ -2.11
CDH11P55287 RNU6-498P-201ENST00000459468 107 ntBASIC1.88□□□□□ -2.11
CDH11P55287 RNU7-57P-201ENST00000459540 60 ntBASIC1.88□□□□□ -2.11
CDH11P55287 RNU2-34P-201ENST00000516534 121 ntBASIC1.88□□□□□ -2.11
CDH11P55287 RNU6-856P-201ENST00000516959 98 ntBASIC1.88□□□□□ -2.11
CDH11P55287 AC040926.1-201ENST00000530195 238 ntBASIC1.88□□□□□ -2.11
CDH11P55287 HSBP1P1-201ENST00000555205 166 ntBASIC1.88□□□□□ -2.11
CDH11P55287 MIR4680-201ENST00000580906 66 ntBASIC1.88□□□□□ -2.11
CDH11P55287 AC016925.2-201ENST00000605108 242 ntBASIC1.88□□□□□ -2.11
CDH11P55287 AC240442.1-201ENST00000616055 283 ntBASIC1.88□□□□□ -2.11
CDH11P55287 uc_338.20-201ENST00000621563 178 ntBASIC1.88□□□□□ -2.11
CDH11P55287 AC022513.1-201ENST00000624512 117 ntBASIC1.88□□□□□ -2.11
CDH11P55287 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.88□□□□□ -2.11
CDH11P55287 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CDH11P55287 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CDH11P55287 RNA5SP493-201ENST00000364115 91 ntBASIC1.87□□□□□ -2.11
CDH11P55287 SNORD14.1-201ENST00000365609 90 ntBASIC1.87□□□□□ -2.11
CDH11P55287 SNORA64-201ENST00000384674 134 ntBASIC1.87□□□□□ -2.11
CDH11P55287 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CDH11P55287 RNU6-130P-201ENST00000411112 103 ntBASIC1.87□□□□□ -2.11
CDH11P55287 BX510359.4-201ENST00000423750 193 ntBASIC1.87□□□□□ -2.11
CDH11P55287 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.87□□□□□ -2.11
CDH11P55287 UQCRBP2-201ENST00000447827 297 ntBASIC1.87□□□□□ -2.11
CDH11P55287 FCF1P4-201ENST00000448326 183 ntBASIC1.87□□□□□ -2.11
CDH11P55287 AC245102.2-201ENST00000448956 180 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms