Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
LIG3P49916 AC005326.1-201ENST00000429197 123 ntBASIC3.38□□□□□ -1.87
LIG3P49916 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.38□□□□□ -1.87
LIG3P49916 RNU6-498P-201ENST00000459468 107 ntBASIC3.38□□□□□ -1.87
LIG3P49916 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.38□□□□□ -1.87
LIG3P49916 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.38□□□□□ -1.87
LIG3P49916 AC022616.8-201ENST00000533569 253 ntBASIC3.38□□□□□ -1.87
LIG3P49916 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.38□□□□□ -1.87
LIG3P49916 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.38□□□□□ -1.87
LIG3P49916 MIR4276-201ENST00000584832 70 ntBASIC3.38□□□□□ -1.87
LIG3P49916 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.38□□□□□ -1.87
LIG3P49916 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
LIG3P49916 AC110774.1-201ENST00000623567 2018 ntBASIC3.37□□□□□ -1.87
LIG3P49916 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.37□□□□□ -1.87
LIG3P49916 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
LIG3P49916 AC068700.1-201ENST00000565862 3754 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNU6-407P-201ENST00000365280 104 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNU6-144P-201ENST00000383951 107 ntBASIC3.37□□□□□ -1.87
LIG3P49916 MIR518C-201ENST00000384822 101 ntBASIC3.37□□□□□ -1.87
LIG3P49916 MIR526A2-201ENST00000390198 65 ntBASIC3.37□□□□□ -1.87
LIG3P49916 Y_RNA.580-201ENST00000391004 95 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNA5SP120-201ENST00000410900 112 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNA5SP344-201ENST00000411081 104 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNU2-32P-201ENST00000411193 191 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RPL32P35-201ENST00000415214 394 ntBASIC3.37□□□□□ -1.87
LIG3P49916 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.37□□□□□ -1.87
LIG3P49916 AC008134.1-201ENST00000420943 193 ntBASIC3.37□□□□□ -1.87
LIG3P49916 SEPT7P4-201ENST00000437076 306 ntBASIC3.37□□□□□ -1.87
LIG3P49916 AL161788.1-201ENST00000441805 169 ntBASIC3.37□□□□□ -1.87
LIG3P49916 UQCRHP3-201ENST00000451503 251 ntBASIC3.37□□□□□ -1.87
LIG3P49916 SNORD65B-201ENST00000459126 73 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RPS26P55-201ENST00000471178 356 ntBASIC3.37□□□□□ -1.87
LIG3P49916 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.37□□□□□ -1.87
LIG3P49916 AC023141.11-201ENST00000508864 202 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNU6-1337P-201ENST00000516525 95 ntBASIC3.37□□□□□ -1.87
LIG3P49916 RNA5SP490-201ENST00000517141 136 ntBASIC3.37□□□□□ -1.87
LIG3P49916 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.37□□□□□ -1.87
LIG3P49916 MIR5688-201ENST00000580619 83 ntBASIC3.37□□□□□ -1.87
LIG3P49916 MIR4744-201ENST00000581563 82 ntBASIC3.37□□□□□ -1.87
LIG3P49916 AC004832.4-201ENST00000608952 331 ntBASIC3.37□□□□□ -1.87
LIG3P49916 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.37□□□□□ -1.87
LIG3P49916 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIG3P49916 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.36□□□□□ -1.87
LIG3P49916 RNU4-84P-201ENST00000364200 139 ntBASIC3.36□□□□□ -1.87
LIG3P49916 RNA5SP240-201ENST00000365355 128 ntBASIC3.36□□□□□ -1.87
LIG3P49916 SNORD50.2-201ENST00000365465 70 ntBASIC3.36□□□□□ -1.87
LIG3P49916 RNU6-449P-201ENST00000383914 107 ntBASIC3.36□□□□□ -1.87
LIG3P49916 SNORA46-201ENST00000384762 135 ntBASIC3.36□□□□□ -1.87
LIG3P49916 MIR23A-201ENST00000385245 73 ntBASIC3.36□□□□□ -1.87
LIG3P49916 AC010154.1-201ENST00000425857 269 ntBASIC3.36□□□□□ -1.87
LIG3P49916 HMGN2P18-201ENST00000450680 270 ntBASIC3.36□□□□□ -1.87
LIG3P49916 RNU2-34P-201ENST00000516534 121 ntBASIC3.36□□□□□ -1.87
LIG3P49916 AC013412.1-201ENST00000610687 192 ntBASIC3.36□□□□□ -1.87
LIG3P49916 MIR548AY-201ENST00000617669 107 ntBASIC3.36□□□□□ -1.87
LIG3P49916 MIR1248-201ENST00000629190 106 ntBASIC3.36□□□□□ -1.87
LIG3P49916 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIG3P49916 Z83843.1-201ENST00000604070 3685 ntBASIC3.36□□□□□ -1.87
LIG3P49916 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.36□□□□□ -1.87
LIG3P49916 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIG3P49916 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIG3P49916 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIG3P49916 MIR367-201ENST00000362299 68 ntBASIC3.35□□□□□ -1.87
LIG3P49916 Y_RNA.24-201ENST00000362508 103 ntBASIC3.35□□□□□ -1.87
LIG3P49916 Y_RNA.172-201ENST00000363765 102 ntBASIC3.35□□□□□ -1.87
LIG3P49916 snoU2_19.4-201ENST00000364329 80 ntBASIC3.35□□□□□ -1.87
LIG3P49916 RNU6-418P-201ENST00000384035 107 ntBASIC3.35□□□□□ -1.87
LIG3P49916 MIR95-201ENST00000385072 81 ntBASIC3.35□□□□□ -1.87
LIG3P49916 SNORA11.1-201ENST00000408133 129 ntBASIC3.35□□□□□ -1.87
LIG3P49916 RNU2-63P-201ENST00000410792 194 ntBASIC3.35□□□□□ -1.87
LIG3P49916 EBAG9P1-201ENST00000418955 543 ntBASIC3.35□□□□□ -1.87
LIG3P49916 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.35□□□□□ -1.87
LIG3P49916 AC115115.1-201ENST00000449927 248 ntBASIC3.35□□□□□ -1.87
LIG3P49916 BX510359.1-201ENST00000456973 237 ntBASIC3.35□□□□□ -1.87
LIG3P49916 AC006435.5-201ENST00000624486 112 ntBASIC3.35□□□□□ -1.87
LIG3P49916 AC068647.2-201ENST00000637380 353 ntBASIC3.35□□□□□ -1.87
LIG3P49916 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.35□□□□□ -1.87
LIG3P49916 FAM35CP-201ENST00000554755 2470 ntBASIC3.35□□□□□ -1.87
LIG3P49916 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.35□□□□□ -1.87
LIG3P49916 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
LIG3P49916 AC073346.2-201ENST00000624724 2058 ntBASIC3.34□□□□□ -1.87
LIG3P49916 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
LIG3P49916 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
LIG3P49916 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LIG3P49916 RNU6-704P-201ENST00000364162 103 ntBASIC3.34□□□□□ -1.87
LIG3P49916 RNU6-1130P-201ENST00000365434 107 ntBASIC3.34□□□□□ -1.87
LIG3P49916 RNU6-969P-201ENST00000383900 105 ntBASIC3.34□□□□□ -1.87
LIG3P49916 SNORD21-201ENST00000383953 95 ntBASIC3.34□□□□□ -1.87
LIG3P49916 RNU6-578P-201ENST00000390980 103 ntBASIC3.34□□□□□ -1.87
LIG3P49916 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.34□□□□□ -1.87
LIG3P49916 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.34□□□□□ -1.87
LIG3P49916 RNU7-115P-201ENST00000516433 55 ntBASIC3.34□□□□□ -1.87
LIG3P49916 SNORA48.11-201ENST00000517015 89 ntBASIC3.34□□□□□ -1.87
LIG3P49916 AC025647.1-201ENST00000517879 253 ntBASIC3.34□□□□□ -1.87
LIG3P49916 AC027419.1-201ENST00000522976 328 ntBASIC3.34□□□□□ -1.87
LIG3P49916 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.34□□□□□ -1.87
LIG3P49916 MIR4724-201ENST00000579485 89 ntBASIC3.34□□□□□ -1.87
LIG3P49916 AP001485.1-201ENST00000604799 199 ntBASIC3.34□□□□□ -1.87
LIG3P49916 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.34□□□□□ -1.87
LIG3P49916 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LIG3P49916 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms