Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.99-201ENST00000363138 105 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 SNORA67.2-201ENST00000384300 149 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 RNU6-308P-201ENST00000390957 107 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 RNU6-1001P-201ENST00000411265 100 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 MTCYBP6-201ENST00000441810 138 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 AL163540.1-201ENST00000485382 386 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.17□□□□□ -2.06
SHMT1P34896 RNU6-1153P-201ENST00000516760 105 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 RNU1-40P-201ENST00000516816 164 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 RNU1-97P-201ENST00000516872 164 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 Y_RNA.711-201ENST00000516993 102 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SHMT1P34896 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.17□□□□□ -2.06
SHMT1P34896 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.17□□□□□ -2.06
SHMT1P34896 AC020661.2-201ENST00000560114 134 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 MIR3171-201ENST00000584270 74 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 MZT1P2-201ENST00000604387 248 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 AC007485.1-201ENST00000616755 206 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.17□□□□□ -2.06
SHMT1P34896 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
SHMT1P34896 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.17□□□□□ -2.06
SHMT1P34896 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
SHMT1P34896 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.16□□□□□ -2.06
SHMT1P34896 RNU6-727P-201ENST00000363592 107 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 RNU6-1305P-201ENST00000364353 104 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 RNU6-318P-201ENST00000384283 103 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 RNY3P4-201ENST00000384428 101 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 RNU6-1011P-201ENST00000384668 107 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 SNORA40.19-201ENST00000390846 128 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.16□□□□□ -2.06
SHMT1P34896 AL160004.2-201ENST00000432935 350 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 CHEK2P4-201ENST00000450340 246 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AC107393.1-201ENST00000512403 346 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 RNU1-117P-201ENST00000517041 158 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 HSBP1P1-201ENST00000555205 166 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.16□□□□□ -2.06
SHMT1P34896 AC233702.2-202ENST00000562547 291 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AC078899.2-201ENST00000595282 212 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AL031274.2-201ENST00000599419 203 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AL356055.1-201ENST00000602528 446 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 SNORD14A-201ENST00000606526 91 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AC084768.2-201ENST00000622736 221 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.16□□□□□ -2.06
SHMT1P34896 AL078596.1-201ENST00000624856 447 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 AC008873.1-201ENST00000625051 138 ntBASIC2.16□□□□□ -2.06
SHMT1P34896 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SHMT1P34896 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.16□□□□□ -2.06
SHMT1P34896 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
SHMT1P34896 Y_RNA.27-201ENST00000362540 103 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 RNA5SP361-201ENST00000362686 118 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 Y_RNA.202-201ENST00000364083 110 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 AC117470.1-201ENST00000381974 330 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 RNU4-52P-201ENST00000384209 138 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 SNORD14D-201ENST00000384390 87 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 Y_RNA.526-201ENST00000384572 110 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 MIR29C-201ENST00000385231 88 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 SNORA17.3-201ENST00000391159 129 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 SNORD23.1-201ENST00000408212 104 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 MIR1262-201ENST00000408276 93 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 U3.40-201ENST00000408706 208 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 PCNPP5-201ENST00000452246 481 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 NDUFB4P10-201ENST00000452541 359 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.15□□□□□ -2.07
SHMT1P34896 AC074133.1-201ENST00000515696 183 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 AC087441.2-201ENST00000529141 262 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.15□□□□□ -2.07
SHMT1P34896 AL442663.2-201ENST00000554385 511 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.15□□□□□ -2.07
SHMT1P34896 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.15□□□□□ -2.07
SHMT1P34896 MIR5188-201ENST00000583467 113 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 MIR4719-201ENST00000585233 84 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 SNORD58B-201ENST00000607313 66 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 AC022202.1-201ENST00000613515 211 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 AC005592.1-201ENST00000566527 1640 ntBASIC2.15□□□□□ -2.07
SHMT1P34896 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
SHMT1P34896 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SHMT1P34896 SNORA22B-201ENST00000383876 138 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 RNA5SP270-201ENST00000411361 118 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 HMGN2P9-201ENST00000476875 229 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 RPS27P21-201ENST00000486977 252 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 AC093852.1-201ENST00000503587 266 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 RNU6-948P-201ENST00000516374 107 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 RNU2-34P-201ENST00000516534 121 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 RNU6-250P-201ENST00000516958 103 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.14□□□□□ -2.07
SHMT1P34896 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.14□□□□□ -2.07
SHMT1P34896 MIR3683-201ENST00000580847 82 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 RPS29P30-201ENST00000600975 111 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 MIR8081-201ENST00000611533 95 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.14□□□□□ -2.07
SHMT1P34896 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SHMT1P34896 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.14□□□□□ -2.07
SHMT1P34896 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
SHMT1P34896 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.14□□□□□ -2.07
SHMT1P34896 Y_RNA.80-201ENST00000362996 102 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 Y_RNA.148-201ENST00000363557 117 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 U3.8-201ENST00000363675 217 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 SNORA3A-201ENST00000364113 130 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 Y_RNA.415-201ENST00000384012 112 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms