Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC112492.4-201ENST00000456549 352 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 RNU6-475P-201ENST00000516073 104 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 RNU6-1137P-201ENST00000517073 99 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 AC023442.1-201ENST00000531247 422 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 GNAI2P1-201ENST00000541815 315 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 NDUFA5P6-201ENST00000542110 379 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 AC093023.1-201ENST00000547375 507 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 HSBP1P1-201ENST00000555205 166 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.79□□□□□ -2.12
HOXD4P09016 AC007229.1-201ENST00000590455 412 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 VN1R91P-201ENST00000594377 169 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXD4P09016 AC005296.1-201ENST00000616145 209 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXD4P09016 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXD4P09016 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXD4P09016 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
HOXD4P09016 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.78□□□□□ -2.12
HOXD4P09016 RNU6-1301P-201ENST00000362724 104 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 Y_RNA.158-201ENST00000363651 101 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 RNU6-879P-201ENST00000364328 108 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 RNU6-318P-201ENST00000384283 103 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 MIR1294-201ENST00000408503 142 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 RNA5SP489-201ENST00000410986 109 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 RNU2-32P-201ENST00000411193 191 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXD4P09016 AC004386.2-201ENST00000441858 148 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXD4P09016 AC018868.1-201ENST00000491307 315 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 SNORA25.14-201ENST00000516481 132 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 RNU6-911P-201ENST00000516523 104 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 SNORA40.14-201ENST00000516543 86 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.78□□□□□ -2.12
HOXD4P09016 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXD4P09016 AC026470.2-201ENST00000561492 181 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXD4P09016 AC026271.5-201ENST00000577873 130 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 MIR4680-201ENST00000580906 66 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXD4P09016 AC104695.3-201ENST00000604052 296 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 TCL6_2.1-201ENST00000615162 119 ntBASIC1.78□□□□□ -2.12
HOXD4P09016 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.78□□□□□ -2.12
HOXD4P09016 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HOXD4P09016 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HOXD4P09016 Y_RNA.4-201ENST00000362333 112 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-280P-201ENST00000364145 104 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 SNORA16B-201ENST00000364674 135 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-234P-201ENST00000365229 104 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-26P-201ENST00000383985 107 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-546P-201ENST00000383991 107 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-245P-201ENST00000384020 107 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-639P-201ENST00000384074 107 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 HMGN2P39-201ENST00000398005 273 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU2-48P-201ENST00000410694 191 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RPL23AP36-201ENST00000413895 458 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 HMGB3P17-201ENST00000504195 649 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.77□□□□□ -2.13
HOXD4P09016 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.77□□□□□ -2.13
HOXD4P09016 SNORA4.4-201ENST00000515921 135 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 Y_RNA.673-201ENST00000516306 88 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 RNU6-1098P-201ENST00000516772 96 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 AL442163.3-201ENST00000554110 156 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 MIR5006-201ENST00000583027 110 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 AL096840.1-201ENST00000603287 93 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 SNRPGP20-201ENST00000604477 205 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 Y_RNA.783-201ENST00000613546 102 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 AL138825.1-201ENST00000618587 192 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 MIR1248-201ENST00000629190 106 ntBASIC1.77□□□□□ -2.13
HOXD4P09016 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.77□□□□□ -2.13
HOXD4P09016 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.77□□□□□ -2.13
HOXD4P09016 RNU1-76P-201ENST00000362903 159 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 Y_RNA.164-201ENST00000363709 102 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 RNU6-450P-201ENST00000364654 107 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC117470.1-201ENST00000381974 330 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 Y_RNA.527-201ENST00000384573 102 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 MIR329-1-201ENST00000385028 80 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 SNORA40.18-201ENST00000391200 128 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 Y_RNA.595-201ENST00000410403 105 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC113618.1-201ENST00000416747 285 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AL118496.2-201ENST00000448300 230 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC091179.3-201ENST00000474761 144 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.76□□□□□ -2.13
HOXD4P09016 ATP5EP1-201ENST00000510257 156 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC107393.1-201ENST00000512403 346 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC108729.3-201ENST00000513484 108 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 MIR2355-201ENST00000517199 87 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC091144.1-201ENST00000519573 138 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC022616.8-201ENST00000533569 253 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC233702.2-202ENST00000562547 291 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 MIR3122-201ENST00000577243 73 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 MIR4498-201ENST00000577599 66 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AC006504.6-201ENST00000590142 199 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AL031274.2-201ENST00000599419 203 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 MZT1P2-201ENST00000604387 248 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.76□□□□□ -2.13
HOXD4P09016 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.76□□□□□ -2.13
HOXD4P09016 AC010999.1-201ENST00000611856 324 ntBASIC1.76□□□□□ -2.13
HOXD4P09016 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms