Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNU6-1040P-201ENST00000383974 107 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 U8.13-201ENST00000390842 128 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 AL139156.1-201ENST00000412785 841 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC11O43248 CST2P1-201ENST00000425770 87 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 AC025647.1-201ENST00000517879 253 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXC11O43248 AC022513.1-201ENST00000624512 117 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
HOXC11O43248 RNA5SP361-201ENST00000362686 118 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 snoU2-30.2-201ENST00000362805 70 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 RNU6-1145P-201ENST00000384246 107 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 EBAG9P1-201ENST00000418955 543 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 MTND4P28-201ENST00000426217 387 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 TOMM22P2-201ENST00000430735 237 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 PCNPP5-201ENST00000452246 481 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 U8.22-201ENST00000459141 133 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 AC105758.1-201ENST00000506038 399 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 AC074133.1-201ENST00000515696 183 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 RN7SKP49-201ENST00000516675 260 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.09□□□□□ -2.07
HOXC11O43248 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.09□□□□□ -2.07
HOXC11O43248 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.09□□□□□ -2.08
HOXC11O43248 Y_RNA.58-201ENST00000362807 102 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 Y_RNA.154-201ENST00000363624 102 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 RNY3P1-201ENST00000365085 102 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 RNA5SP138-201ENST00000365098 114 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 RNA5SP37-201ENST00000365420 130 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 RNY3-201ENST00000365484 102 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 MIR515-2-201ENST00000384883 83 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 MIR515-1-201ENST00000384884 83 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 MIR628-201ENST00000385229 95 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 Y_RNA.592-201ENST00000410274 109 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 RNU2-7P-201ENST00000410794 178 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 RNU7-169P-201ENST00000459456 61 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXC11O43248 SUB1P4-201ENST00000566062 339 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 MIR4795-201ENST00000584182 89 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 MIR5002-201ENST00000584713 97 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 Y_RNA.783-201ENST00000613546 102 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXC11O43248 MIR338-201ENST00000636369 67 ntBASIC2.08□□□□□ -2.08
HOXC11O43248 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
HOXC11O43248 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
HOXC11O43248 RNU6-1019P-201ENST00000364424 107 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 SNORA72.2-201ENST00000365028 127 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 Y_RNA.428-201ENST00000384078 102 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 Y_RNA.498-201ENST00000384460 102 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 SNORA26.9-201ENST00000391322 122 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 RNU2-40P-201ENST00000410833 196 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 RNA5SP100-201ENST00000410903 110 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 RNA5SP59-201ENST00000410922 110 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 RNA5SP489-201ENST00000410986 109 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AC009310.1-201ENST00000414414 451 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AC099677.2-201ENST00000436385 175 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AC092473.1-201ENST00000441098 221 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AC069257.2-201ENST00000441819 155 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXC11O43248 RNU6-717P-201ENST00000459076 104 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXC11O43248 RNU6-295P-201ENST00000516901 104 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AK6P2-201ENST00000549020 471 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXC11O43248 MIR4713-201ENST00000582691 75 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 LARP7P1-201ENST00000605576 316 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 AC087588.2-201ENST00000617667 426 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.07□□□□□ -2.08
HOXC11O43248 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.06□□□□□ -2.08
HOXC11O43248 RNU6-1264P-201ENST00000383891 107 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 RNU6-417P-201ENST00000384712 107 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 RNU6-482P-201ENST00000391068 107 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 AC019129.1-201ENST00000403786 261 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.06□□□□□ -2.08
HOXC11O43248 AC007677.1-201ENST00000445757 515 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 RNU7-152P-201ENST00000458982 64 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 RNU6-699P-201ENST00000517081 110 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 SNORD116.3-201ENST00000517176 78 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXC11O43248 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXC11O43248 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXC11O43248 MTND4P1-201ENST00000457501 1466 ntBASIC2.06□□□□□ -2.08
HOXC11O43248 AC010615.1-201ENST00000594254 1764 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HOXC11O43248 RNU6-1301P-201ENST00000362724 104 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 MIR520A-201ENST00000384862 85 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 MIR559-201ENST00000385188 96 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 RNA5SP323-201ENST00000391094 133 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 AL117342.1-201ENST00000404861 406 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 SNORD12B-201ENST00000410433 91 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.05□□□□□ -2.08
HOXC11O43248 RNA5SP182-201ENST00000516064 82 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 AC018448.1-201ENST00000552843 316 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 uc_338.20-201ENST00000621563 178 ntBASIC2.05□□□□□ -2.08
HOXC11O43248 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms