Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HIF3AQ9Y2N7 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HIF3AQ9Y2N7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HIF3AQ9Y2N7 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HIF3AQ9Y2N7 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.4□□□□□ -1.86
HIF3AQ9Y2N7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 Y_RNA.634-201ENST00000364811 113 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 Y_RNA.346-201ENST00000365385 112 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 Y_RNA.369-201ENST00000365568 117 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-1083P-201ENST00000384022 107 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 RNU1-13P-201ENST00000384499 162 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 RN7SKP284-201ENST00000411002 343 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 RPL36AP21-201ENST00000490372 323 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 AC010598.1-201ENST00000510378 103 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 MIR3160-1-201ENST00000577972 85 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 VN1R85P-201ENST00000601587 426 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 AL022345.2-201ENST00000606307 135 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 SNORA62.6-201ENST00000606322 83 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 AC068647.1-201ENST00000489539 2265 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 MTND5P18-201ENST00000445624 1801 ntBASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.4□□□□□ -1.87
HIF3AQ9Y2N7 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 AL136360.1-201ENST00000503377 1900 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 Y_RNA.52-201ENST00000362760 96 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-486P-201ENST00000363116 107 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-221P-201ENST00000459541 99 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 RPL21P10-201ENST00000463521 490 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 SNORA18.4-201ENST00000516440 124 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 AL160236.1-201ENST00000556317 195 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 AC015720.1-201ENST00000565251 277 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 AC093732.2-201ENST00000607950 274 ntBASIC3.39□□□□□ -1.87
HIF3AQ9Y2N7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 SPRR2C-201ENST00000290702 219 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-234P-201ENST00000365229 104 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-975P-201ENST00000384296 105 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 MIRLET7F2-201ENST00000385277 83 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 RNA5SP424-201ENST00000390988 115 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 MIR1263-201ENST00000408324 86 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-628P-201ENST00000410675 107 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AC009414.1-201ENST00000427200 443 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 ARF4P2-201ENST00000430209 526 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AL117339.2-201ENST00000430475 180 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-844P-201ENST00000517175 102 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AC096577.2-201ENST00000611455 153 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 uc_338.4-201ENST00000616635 176 ntBASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.38□□□□□ -1.87
HIF3AQ9Y2N7 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-106P-201ENST00000384405 107 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 SNORA3.3-201ENST00000408712 125 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-554P-201ENST00000410466 106 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 SNORD77.4-201ENST00000516158 81 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 RNA5SP153-201ENST00000516498 76 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC109329.2-201ENST00000519658 482 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC022695.1-201ENST00000522089 237 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 IGKV1-22-201ENST00000524313 326 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC105245.1-201ENST00000581934 244 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AL591926.4-201ENST00000616895 298 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC106754.2-201ENST00000623006 233 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 CEP170P1-201ENST00000502249 4587 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 AC058791.1-201ENST00000608412 3198 ntBASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HIF3AQ9Y2N7 MIR372-201ENST00000362225 67 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 SNORD73B-201ENST00000364394 72 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 RNU6-1274P-201ENST00000384557 107 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 AC010531.2-201ENST00000465012 153 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 ATP5EP1-201ENST00000510257 156 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 SCARNA14-201ENST00000516903 136 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 RNU1-104P-201ENST00000517280 175 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 CYCSP30-201ENST00000546447 172 ntBASIC3.36□□□□□ -1.87
HIF3AQ9Y2N7 AL606490.9-201ENST00000603331 271 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms