Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNA5SP68-201ENST00000363885 119 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 SNORA67.2-201ENST00000384300 149 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AL357139.1-201ENST00000407792 426 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP475-201ENST00000410568 110 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP184-201ENST00000411071 108 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AL513328.1-201ENST00000446460 224 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AL109933.2-201ENST00000452651 260 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 SEPT14P8-201ENST00000508026 178 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AC026436.1-201ENST00000510537 270 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 MIR449C-201ENST00000516047 92 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 RNU1-117P-201ENST00000517041 158 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4513-201ENST00000581077 86 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AC090616.3-201ENST00000582184 217 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4753-201ENST00000585119 83 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 AC011373.1-201ENST00000607270 237 ntBASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 AC009487.4-201ENST00000624969 3585 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP393-201ENST00000363423 117 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 Y_RNA.222-201ENST00000364264 102 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-1305P-201ENST00000364353 104 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 SNORA72.2-201ENST00000365028 127 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-937P-201ENST00000384325 106 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 MIR1283-1-201ENST00000408494 87 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-121P-201ENST00000410525 99 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 RAB28P5-201ENST00000427490 651 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 TOMM22P2-201ENST00000430735 237 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-107P-201ENST00000516643 102 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 SNORD113-5-201ENST00000607261 78 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 MIR6817-201ENST00000615588 66 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 MIR3674-201ENST00000636576 68 ntBASIC2.79□□□□□ -1.96
LIMCH1Q9UPQ0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 SNORD114-30-201ENST00000364448 72 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP125-201ENST00000364843 120 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-806P-201ENST00000365147 105 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP504-201ENST00000410676 117 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RPL23AP36-201ENST00000413895 458 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP148-201ENST00000516527 94 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 RPL12P50-201ENST00000603116 116 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 MIR1248-201ENST00000629190 106 ntBASIC2.78□□□□□ -1.96
LIMCH1Q9UPQ0 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 SNORD81.1-201ENST00000363064 77 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.105-201ENST00000363182 111 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 RNU1-23P-201ENST00000363361 144 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.288-201ENST00000364854 92 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-438P-201ENST00000365561 103 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.376-201ENST00000365638 108 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.461-201ENST00000384263 103 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.512-201ENST00000384518 102 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.570-201ENST00000384750 101 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.581-201ENST00000391017 97 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-965P-201ENST00000516721 96 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 AC103810.6-201ENST00000606708 136 ntBASIC2.77□□□□□ -1.97
LIMCH1Q9UPQ0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.26-201ENST00000362539 101 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 RNU4-90P-201ENST00000362773 141 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 SNORD113-8-201ENST00000363497 74 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 SNORD87-201ENST00000364849 89 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-21P-201ENST00000384710 107 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.618-201ENST00000410949 107 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 HMGN2P18-201ENST00000450680 270 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 AC016925.1-201ENST00000458303 298 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 HMGN2P9-201ENST00000476875 229 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 RNU7-110P-201ENST00000516891 62 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 MIR3684-201ENST00000579779 74 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 MIR5194-201ENST00000582634 120 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 AC022441.3-201ENST00000605737 136 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 FO624990.1-201ENST00000636373 85 ntBASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
LIMCH1Q9UPQ0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-545P-201ENST00000362681 104 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-1175P-201ENST00000365200 107 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 RNU2-20P-201ENST00000410425 191 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 RPL21P38-201ENST00000418090 167 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 AC009238.1-201ENST00000442165 424 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 AC009237.6-201ENST00000446969 424 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 TRBVB-201ENST00000477100 408 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 ATP5EP1-201ENST00000510257 156 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 RNU6-496P-201ENST00000516145 99 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 Y_RNA.668-201ENST00000516233 93 ntBASIC2.75□□□□□ -1.97
LIMCH1Q9UPQ0 RNA5SP490-201ENST00000517141 136 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms