Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC130289.1-201ENST00000577321 73 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 AC090616.3-201ENST00000582184 217 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 AC006380.1-201ENST00000603598 186 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 SCARNA15.3-201ENST00000626315 122 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 SCARNA4.1-201ENST00000628597 123 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 MIR1248-201ENST00000629190 106 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 AC092435.3-201ENST00000565538 3654 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 UBE2WP1-201ENST00000362030 340 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 SNORD115-30-201ENST00000364117 82 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-200P-201ENST00000364743 107 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 AL590004.2-201ENST00000404787 371 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 RNU2-32P-201ENST00000411193 191 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 AP001486.1-201ENST00000463339 476 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 RNA5SP385-201ENST00000515947 110 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-436P-201ENST00000516171 114 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 AL162424.1-201ENST00000602325 221 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 MIR7106-201ENST00000612419 65 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.96□□□□□ -1.94
PCIF1Q9H4Z3 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.117-201ENST00000363294 101 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.274-201ENST00000364714 101 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.329-201ENST00000365209 107 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-546P-201ENST00000383991 107 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 MIR300-201ENST00000401138 83 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 U3.40-201ENST00000408706 208 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 AL513477.1-202ENST00000417061 214 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 CKS1BP2-201ENST00000497342 240 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-191P-201ENST00000516295 94 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 SNORA27.4-201ENST00000516650 95 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 SNORA48.11-201ENST00000517015 89 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 AC022616.8-201ENST00000533569 253 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 MIR4506-201ENST00000584693 77 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 ELOCP29-201ENST00000588193 334 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 AL356280.1-201ENST00000603614 379 ntBASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
PCIF1Q9H4Z3 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-324P-201ENST00000363957 106 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 SNORD31B-201ENST00000364977 69 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 RNU2-52P-201ENST00000410680 190 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 RNA5SP21-201ENST00000410917 96 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 AL139156.1-201ENST00000412785 841 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 SRIP1-201ENST00000489235 288 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 RNA5SP76-201ENST00000516277 87 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 MIR4753-201ENST00000585119 83 ntBASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
PCIF1Q9H4Z3 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 AC138915.1-201ENST00000565427 1685 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.243-201ENST00000364481 109 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-662P-201ENST00000384253 104 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 AL031003.1-201ENST00000404229 172 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 MIR1185-2-201ENST00000408687 86 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 CYP2C59P-201ENST00000457790 269 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 AC016925.1-201ENST00000458303 298 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 AL049873.1-201ENST00000480540 376 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 PRELID2P1-201ENST00000552837 301 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 MIR3117-201ENST00000584034 78 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 AL512605.2-201ENST00000592972 256 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 U6.115-201ENST00000636045 103 ntBASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
PCIF1Q9H4Z3 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-743P-201ENST00000364151 106 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-1289P-201ENST00000384431 106 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 MIR1298-201ENST00000408783 112 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 RNU2-64P-201ENST00000411315 191 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 AC003685.2-201ENST00000422795 395 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 AC016717.1-201ENST00000448918 286 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 SNORD109B-201ENST00000458961 67 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 SNORD109A-201ENST00000459128 67 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 RNU7-57P-201ENST00000459540 60 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 SNORD116-28-201ENST00000516123 91 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms