Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC005899.2-201ENST00000584353 90 ntBASIC1.26□□□□□ -2.21
RPUSD4Q96CM3 AL355802.3-201ENST00000607571 545 ntBASIC1.26□□□□□ -2.21
RPUSD4Q96CM3 AC126177.8-201ENST00000618339 1015 ntBASIC1.26□□□□□ -2.21
RPUSD4Q96CM3 AC099654.5-201ENST00000636479 350 ntBASIC1.26□□□□□ -2.21
RPUSD4Q96CM3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 SNORD114-1-201ENST00000362705 72 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.179-201ENST00000363844 90 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.184-201ENST00000363884 108 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 RNU6-601P-201ENST00000384540 107 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 MIR548B-201ENST00000385247 97 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 MIR190B-201ENST00000401119 79 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 RN7SKP101-201ENST00000411376 320 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 MTCYBP10-201ENST00000424905 650 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 SDAD1P3-201ENST00000427380 333 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 EIF1P2-201ENST00000428233 350 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 FTH1P12-201ENST00000432137 551 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 HMGN2P23-201ENST00000456759 269 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 RNA5SP437-201ENST00000517249 129 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 UBL5P4-201ENST00000562584 236 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 AC090617.3-201ENST00000573670 475 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 MIR8074-201ENST00000615081 81 ntBASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.25□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.160-201ENST00000363677 92 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.287-201ENST00000364853 94 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 RNU6-1240P-201ENST00000365155 104 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.364-201ENST00000365532 101 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 RNU6-338P-201ENST00000383888 105 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 MIR320A-201ENST00000385302 82 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 RNU6-57P-201ENST00000411348 103 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 AL161935.2-201ENST00000414627 60 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 USP9YP16-201ENST00000430287 407 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 USP9YP23-201ENST00000455085 407 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 RPS26P45-201ENST00000471748 340 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.675-201ENST00000516389 149 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 RNU6-307P-201ENST00000516743 106 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 SNORA20.3-201ENST00000516880 132 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 SNORA77B-201ENST00000578179 125 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 AC022432.1-201ENST00000595739 310 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 AC009229.3-201ENST00000608056 282 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 AC010999.1-201ENST00000611856 324 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 MTND5P10-201ENST00000603719 1809 ntBASIC1.24□□□□□ -2.21
RPUSD4Q96CM3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 MIR410-201ENST00000362222 80 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 RNY1P16-201ENST00000363063 111 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.106-201ENST00000363189 100 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.415-201ENST00000384012 112 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 RNU6-700P-201ENST00000391043 107 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 TOMM22P2-201ENST00000430735 237 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 HSPE1P9-201ENST00000440046 311 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 JTBP1-201ENST00000441314 247 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.683-201ENST00000516508 93 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 RNU1-117P-201ENST00000517041 158 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 AC008269.2-201ENST00000561915 1105 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 AC005668.1-201ENST00000571142 476 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 MIR502-201ENST00000606349 86 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 MIR7974-201ENST00000615835 79 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 AC006435.5-201ENST00000624486 112 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 AC099654.14-201ENST00000638599 341 ntBASIC1.23□□□□□ -2.21
RPUSD4Q96CM3 MIR424-201ENST00000362227 98 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 RNU1-42P-201ENST00000364033 160 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 SNORD87-201ENST00000364849 89 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 SNORD81.2-201ENST00000365153 76 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 Y_RNA.404-201ENST00000383978 102 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MIR150-201ENST00000385048 84 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 AC138393.2-201ENST00000414742 246 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 UBE2V1P7-201ENST00000446395 340 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MTND3P10-201ENST00000450967 341 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 RPS29P23-201ENST00000458635 123 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 UBL5P3-201ENST00000475112 231 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 PRDX4P1-201ENST00000507189 574 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 RNU6-250P-201ENST00000516958 103 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MIR3684-201ENST00000579779 74 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 AC125232.2-201ENST00000592457 143 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MZT1P2-201ENST00000604387 248 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 PRR13P7-201ENST00000605538 430 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MIR8081-201ENST00000611533 95 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 AC005858.4-201ENST00000623191 700 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms