Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RNU6-794P-201ENST00000517261 64 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 AC005176.2-201ENST00000596933 147 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 AL713866.2-201ENST00000603579 219 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 SNORD113-5-201ENST00000607261 78 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 MIR6895-201ENST00000613497 78 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 SCARNA15.3-201ENST00000626315 122 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 SCARNA4.1-201ENST00000628597 123 ntBASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.26□□□□□ -2.05
CLIP4Q8N3C7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 MIR21-201ENST00000362134 72 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 MIR335-201ENST00000362173 94 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 RNU4-90P-201ENST00000362773 141 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.230-201ENST00000364348 109 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 SNORA20.1-201ENST00000364790 130 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.286-201ENST00000364813 102 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 RNU6-1175P-201ENST00000365200 107 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.518-201ENST00000384552 113 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 RNU6-21P-201ENST00000384710 107 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.570-201ENST00000384750 101 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 MTND4LP30-201ENST00000454092 297 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 HSPE1P25-201ENST00000455484 251 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 RNA5SP356-201ENST00000515972 94 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.673-201ENST00000516306 88 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 AC055872.1-201ENST00000570978 278 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 MIR4423-201ENST00000580922 80 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CLIP4Q8N3C7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.60-201ENST00000362831 98 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.111-201ENST00000363248 100 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 SNORD32B-201ENST00000364460 84 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 SNORA67.1-201ENST00000364749 141 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 SNORA72.2-201ENST00000365028 127 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.415-201ENST00000384012 112 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 MIR518C-201ENST00000384822 101 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 MIR196B-201ENST00000384852 84 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 RNU6-847P-201ENST00000411115 108 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 AC139712.2-201ENST00000424302 339 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 RAB28P5-201ENST00000427490 651 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 AC104389.3-201ENST00000445629 235 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 AC009237.7-201ENST00000447357 229 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 EEF1B2P7-201ENST00000451177 676 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 AC090515.1-201ENST00000465295 476 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 RNU6-1023P-201ENST00000516137 106 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 RNU6-344P-201ENST00000516635 111 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 RNU6-107P-201ENST00000516643 102 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 RNU1-117P-201ENST00000517041 158 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 MIR3668-201ENST00000582138 75 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 SNORD11B-201ENST00000607707 90 ntBASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CLIP4Q8N3C7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC007336.1-201ENST00000576365 3828 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC135776.4-201ENST00000624300 1904 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RNU6-944P-201ENST00000364023 107 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 SNORD87-201ENST00000364849 89 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RNU6-290P-201ENST00000365212 101 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RNU6-1274P-201ENST00000384557 107 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RNA5SP475-201ENST00000410568 110 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RNA5SP184-201ENST00000411071 108 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AL390729.2-201ENST00000416137 156 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AL513328.1-201ENST00000446460 224 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC011753.1-201ENST00000451001 220 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AL109933.2-201ENST00000452651 260 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RPS23P5-201ENST00000495419 428 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 HMGB3P17-201ENST00000504195 649 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 MIR449C-201ENST00000516047 92 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC008749.1-201ENST00000597650 306 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC010900.2-201ENST00000604508 210 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC004467.1-201ENST00000615678 330 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC078938.1-201ENST00000620993 318 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 U4.3-201ENST00000621047 82 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AC006001.4-201ENST00000622243 395 ntBASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.23□□□□□ -2.05
CLIP4Q8N3C7 RNA5SP68-201ENST00000363885 119 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.331-201ENST00000365267 102 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RNU6-1310P-201ENST00000384153 107 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms