Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.08□□□□□ -1.92
USP53Q70EK8 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.08□□□□□ -1.92
USP53Q70EK8 AC022616.8-201ENST00000533569 253 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.08□□□□□ -1.92
USP53Q70EK8 AL356280.1-201ENST00000603614 379 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.08□□□□□ -1.92
USP53Q70EK8 AL008718.3-201ENST00000610217 321 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 AL078604.3-201ENST00000615580 211 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.08□□□□□ -1.92
USP53Q70EK8 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
USP53Q70EK8 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
USP53Q70EK8 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
USP53Q70EK8 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP53Q70EK8 Y_RNA.150-201ENST00000363562 102 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 RNU6-1020P-201ENST00000363684 107 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 RNU6-546P-201ENST00000383991 107 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 RNU6-886P-201ENST00000384319 105 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 RNA5SP229-201ENST00000410809 99 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 RNU2-32P-201ENST00000411193 191 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 AL353705.1-201ENST00000433468 480 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.07□□□□□ -1.92
USP53Q70EK8 AC008885.1-201ENST00000514930 301 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 RNU6-965P-201ENST00000516721 96 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 SNORA48.11-201ENST00000517015 89 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 AC068657.1-201ENST00000520807 306 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.07□□□□□ -1.92
USP53Q70EK8 snoZ196.1-201ENST00000625269 89 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 MIR1248-201ENST00000629190 106 ntBASIC3.07□□□□□ -1.92
USP53Q70EK8 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
USP53Q70EK8 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.07□□□□□ -1.92
USP53Q70EK8 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP53Q70EK8 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.07□□□□□ -1.92
USP53Q70EK8 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.07□□□□□ -1.92
USP53Q70EK8 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.06□□□□□ -1.92
USP53Q70EK8 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
USP53Q70EK8 SNORD114-7-201ENST00000362520 77 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 Y_RNA.262-201ENST00000364641 102 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 RNA5SP126-201ENST00000365092 109 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 RNA5SP240-201ENST00000365355 128 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 RNU6-47P-201ENST00000383866 107 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 RNU6-220P-201ENST00000390919 107 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 PCNPP3-201ENST00000393579 471 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AL031121.1-201ENST00000406553 254 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 BTF3P11-201ENST00000426582 477 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AC022018.1-201ENST00000430685 241 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AL135790.2-201ENST00000437701 267 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 Y_RNA.637-201ENST00000459424 114 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 RNU6-221P-201ENST00000459541 99 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.06□□□□□ -1.92
USP53Q70EK8 AC107393.1-201ENST00000512403 346 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AC136628.3-201ENST00000521868 290 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.06□□□□□ -1.92
USP53Q70EK8 AC104984.5-201ENST00000586878 94 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AC004832.5-201ENST00000608677 401 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.06□□□□□ -1.92
USP53Q70EK8 AC092435.3-201ENST00000565538 3654 ntBASIC3.06□□□□□ -1.92
USP53Q70EK8 AC009487.4-201ENST00000624969 3585 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
USP53Q70EK8 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.05□□□□□ -1.92
USP53Q70EK8 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP53Q70EK8 RNU1-23P-201ENST00000363361 144 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 RNU6-801P-201ENST00000364087 105 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 RNU6-461P-201ENST00000364195 107 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 OOSP1P1-201ENST00000423265 274 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 SUMO1P3-201ENST00000439961 304 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 CKS1BP2-201ENST00000497342 240 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 SNORA70.12-201ENST00000516084 153 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 AC104027.1-201ENST00000521887 300 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP53Q70EK8 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.05□□□□□ -1.92
USP53Q70EK8 MIR4672-201ENST00000583126 81 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 MIR3616-201ENST00000584070 92 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 AL365265.1-201ENST00000621045 234 ntBASIC3.05□□□□□ -1.92
USP53Q70EK8 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
USP53Q70EK8 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP53Q70EK8 FAM35CP-201ENST00000554755 2470 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.04□□□□□ -1.92
USP53Q70EK8 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP53Q70EK8 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP53Q70EK8 MIR449A-201ENST00000362113 91 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 RNU6-653P-201ENST00000363074 106 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 Y_RNA.368-201ENST00000365547 113 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 SNORA7.4-201ENST00000384249 137 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 SNORD15B-201ENST00000384714 146 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 RNU6-763P-201ENST00000390865 106 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 AL357139.1-201ENST00000407792 426 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 AC104332.1-201ENST00000440471 797 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 HMGN2P18-201ENST00000450680 270 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 EEF1B2P7-201ENST00000451177 676 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.04□□□□□ -1.92
USP53Q70EK8 RN7SKP40-201ENST00000517211 242 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 MIR5692C2-201ENST00000577959 77 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 AC072026.1-201ENST00000605023 201 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 AL033523.1-201ENST00000605153 153 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 uc_338.25-201ENST00000613756 156 ntBASIC3.04□□□□□ -1.92
USP53Q70EK8 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP53Q70EK8 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USP53Q70EK8 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP53Q70EK8 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms