Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 MRPS35P2-201ENST00000508242 191 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 MIR6715A-201ENST00000615929 79 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-1266P-201ENST00000362794 105 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 RNU1-52P-201ENST00000384190 164 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 MIR1261-201ENST00000408659 82 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 AC007064.1-201ENST00000412238 351 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 SUMO1P4-201ENST00000429430 302 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 AC005002.2-201ENST00000438228 269 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-397P-201ENST00000516226 104 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 SNORA9.3-201ENST00000516383 129 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 RNA5SP148-201ENST00000516527 94 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 AC104984.5-201ENST00000586878 94 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 AC006380.1-201ENST00000603598 186 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 AC005034.5-201ENST00000604219 466 ntBASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC144BQ3MJ40 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-770P-201ENST00000363929 105 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-130P-201ENST00000411112 103 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-57P-201ENST00000411348 103 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 SUMO1P2-201ENST00000452524 304 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC010655.3-201ENST00000478818 450 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC096725.1-201ENST00000514266 313 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AL117187.1-201ENST00000555482 181 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 MIR3605-201ENST00000583214 100 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 ZNF861P-201ENST00000588126 639 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AL109918.3-201ENST00000603072 338 ntBASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC144BQ3MJ40 Y_RNA.143-201ENST00000363520 106 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 RNA5SP270-201ENST00000411361 118 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 AC016717.1-201ENST00000448918 286 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 RNY3P15-201ENST00000516297 97 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-856P-201ENST00000516959 98 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 MIR4423-201ENST00000580922 80 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 AC011373.1-201ENST00000607270 237 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 AC004467.1-201ENST00000615678 330 ntBASIC3.06□□□□□ -1.92
CCDC144BQ3MJ40 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 Y_RNA.176-201ENST00000363815 109 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 Y_RNA.214-201ENST00000364201 112 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 SNORA67.4-201ENST00000384688 142 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 RPL23AP36-201ENST00000413895 458 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 AL731563.1-201ENST00000442202 214 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 AC107222.1-201ENST00000510899 637 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 AC008413.1-201ENST00000511864 177 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 AC004486.1-201ENST00000546846 233 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 MIR376A1-201ENST00000616574 68 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 AL590808.1-201ENST00000618696 141 ntBASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC144BQ3MJ40 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 snosnR66.1-201ENST00000391095 99 ntBASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-1109P-201ENST00000391187 107 ntBASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-1146P-201ENST00000516282 102 ntBASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.04□□□□□ -1.92
CCDC144BQ3MJ40 Y_RNA.19-201ENST00000362462 99 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-1240P-201ENST00000365155 104 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 Y_RNA.570-201ENST00000384750 101 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 MIR524-201ENST00000385242 87 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 RPL21P1-201ENST00000399532 476 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 MIR548F4-201ENST00000408515 105 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 ELOCP20-201ENST00000422460 345 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 AL358176.2-201ENST00000425769 204 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 SEPT14P8-201ENST00000508026 178 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 RNU1-41P-201ENST00000516161 162 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 RNU1-48P-201ENST00000516400 162 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 RNU6-635P-201ENST00000516651 102 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 RNU1-104P-201ENST00000517280 175 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 AC025647.1-201ENST00000517879 253 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 AC022441.3-201ENST00000605737 136 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 SNORD14A-201ENST00000606526 91 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 AC091932.3-201ENST00000624223 323 ntBASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
CCDC144BQ3MJ40 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
CCDC144BQ3MJ40 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC144BQ3MJ40 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms