Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXA9P31269 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXA9P31269 ACA59.1-201ENST00000515966 143 ntBASIC1.33□□□□□ -2.2
HOXA9P31269 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXA9P31269 MIR4790-201ENST00000577799 79 ntBASIC1.33□□□□□ -2.2
HOXA9P31269 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.33□□□□□ -2.2
HOXA9P31269 AC122108.2-201ENST00000611946 526 ntBASIC1.33□□□□□ -2.2
HOXA9P31269 TCL6_2.1-201ENST00000615162 119 ntBASIC1.33□□□□□ -2.2
HOXA9P31269 MIR6128-201ENST00000615528 109 ntBASIC1.33□□□□□ -2.2
HOXA9P31269 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.33□□□□□ -2.2
HOXA9P31269 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.33□□□□□ -2.2
HOXA9P31269 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.32□□□□□ -2.2
HOXA9P31269 MTND5P9-201ENST00000503854 1755 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 RNU6-23P-201ENST00000363283 107 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 Y_RNA.339-201ENST00000365325 102 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 RNU6-418P-201ENST00000384035 107 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 SNORA67.2-201ENST00000384300 149 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 Y_RNA.533-201ENST00000384596 114 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 MIR32-201ENST00000384965 70 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 MIR548K-201ENST00000408406 116 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 AC243428.1-201ENST00000421099 264 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 MTND1P2-201ENST00000430604 821 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 SNORD5.1-201ENST00000458800 75 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 RPL30P10-201ENST00000488148 337 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.32□□□□□ -2.2
HOXA9P31269 MIR5006-201ENST00000583027 110 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 SNORA4-201ENST00000584302 138 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 MIR8074-201ENST00000615081 81 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 U6atac.1-201ENST00000616025 117 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 AC130454.1-201ENST00000622948 401 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HOXA9P31269 BX322639.1-202ENST00000423987 2213 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 CASC19-280ENST00000642102 1351 ntBASIC1.32□□□□□ -2.2
HOXA9P31269 MIR26B-201ENST00000362251 77 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 Y_RNA.48-201ENST00000362710 103 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 RNU4-9P-201ENST00000364951 139 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 RNY1P14-201ENST00000384426 108 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 SNORA48.1-201ENST00000390879 135 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
HOXA9P31269 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.31□□□□□ -2.2
HOXA9P31269 snoU13.30-201ENST00000458951 104 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 RNU6-58P-201ENST00000517143 103 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.31□□□□□ -2.2
HOXA9P31269 RRN3P3-201ENST00000549207 578 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.31□□□□□ -2.2
HOXA9P31269 AC011712.1-201ENST00000588959 234 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.31□□□□□ -2.2
HOXA9P31269 ZNF204P-201ENST00000416749 2397 ntBASIC1.31□□□□□ -2.2
HOXA9P31269 RNU1-62P-201ENST00000362599 164 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 Y_RNA.72-201ENST00000362894 103 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 SNORD115-8-201ENST00000363856 82 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 SNORD115-32-201ENST00000364079 82 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 SNORD115-38-201ENST00000365037 82 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 RNU6-1026P-201ENST00000384465 108 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
HOXA9P31269 RNU1-78P-201ENST00000391248 165 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 RPL21P1-201ENST00000399532 476 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 MIR548F5-201ENST00000408421 86 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 MIR1283-1-201ENST00000408494 87 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 RNA5SP100-201ENST00000410903 110 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 RNA5SP59-201ENST00000410922 110 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.3□□□□□ -2.2
HOXA9P31269 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.3□□□□□ -2.2
HOXA9P31269 AC009237.7-201ENST00000447357 229 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AC007395.1-201ENST00000451333 677 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 RPS29P29-201ENST00000456396 171 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 snoU13.9-201ENST00000458927 103 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AC026782.1-201ENST00000512952 449 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.3□□□□□ -2.2
HOXA9P31269 AC027288.2-201ENST00000553028 243 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AC026470.2-201ENST00000561492 181 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AC068338.1-201ENST00000565567 176 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 AC010900.2-201ENST00000604508 210 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.3□□□□□ -2.2
HOXA9P31269 AC137590.2-201ENST00000619709 240 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.3□□□□□ -2.2
HOXA9P31269 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
HOXA9P31269 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.3□□□□□ -2.2
HOXA9P31269 CBX3P1-201ENST00000325243 554 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 Y_RNA.184-201ENST00000363884 108 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 RNU6-595P-201ENST00000363944 107 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 Y_RNA.279-201ENST00000364763 95 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 SNORD114-22-201ENST00000365423 72 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXA9P31269 RNU6-17P-201ENST00000384245 107 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 RNU6-18P-201ENST00000384527 107 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 MIR489-201ENST00000384923 84 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 MT-TL1-201ENST00000386347 75 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 RNA5SP504-201ENST00000410676 117 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC060773.1-201ENST00000421698 310 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AL445305.1-201ENST00000432577 575 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC099677.2-201ENST00000436385 175 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC245517.4-201ENST00000448601 281 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC016717.1-201ENST00000448918 286 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC067942.3-201ENST00000512025 362 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms