Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC096644.4-201ENST00000563417 2912 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD3P31249 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD3P31249 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD3P31249 AC092593.1-201ENST00000515413 1815 ntBASIC2.21□□□□□ -2.05
HOXD3P31249 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.21□□□□□ -2.05
HOXD3P31249 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.21□□□□□ -2.05
HOXD3P31249 Y_RNA.269-201ENST00000364685 89 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 Y_RNA.352-201ENST00000365439 102 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 MIR196B-201ENST00000384852 84 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 RN7SKP58-201ENST00000411010 305 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AC009963.1-201ENST00000417265 157 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXD3P31249 MTCO1P5-201ENST00000433573 344 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 POLR2KP2-201ENST00000438155 177 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AL161788.1-201ENST00000441805 169 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AC005042.3-201ENST00000453230 174 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 RN7SL75P-201ENST00000461926 281 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXD3P31249 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXD3P31249 RNU2-31P-201ENST00000516954 155 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXD3P31249 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXD3P31249 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXD3P31249 MIR4435-1-201ENST00000582552 80 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXD3P31249 AL590240.4-201ENST00000616908 390 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 MIR5739-201ENST00000619803 80 ntBASIC2.21□□□□□ -2.06
HOXD3P31249 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXD3P31249 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXD3P31249 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXD3P31249 AC062016.1-201ENST00000355719 319 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU4-82P-201ENST00000362443 140 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 VTRNA1-1-201ENST00000363120 99 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 Y_RNA.117-201ENST00000363294 101 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU6-740P-201ENST00000364734 105 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU6-326P-201ENST00000365480 107 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU6-1264P-201ENST00000383891 107 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU6-1310P-201ENST00000384153 107 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 SNORD14D-201ENST00000384390 87 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 Y_RNA.552-201ENST00000384665 112 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 SNORA53-201ENST00000391141 249 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RPL21P3-201ENST00000395517 478 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 MIR548H3-201ENST00000408771 118 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU2-54P-201ENST00000410299 190 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU2-52P-201ENST00000410680 190 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU2-32P-201ENST00000411193 191 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AL390729.2-201ENST00000416137 156 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 OOSP1P1-201ENST00000423265 274 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AC244505.4-201ENST00000434905 287 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 SSXP5-201ENST00000443473 287 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AC016717.1-201ENST00000448918 286 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AL109933.2-201ENST00000452651 260 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 HMGN2P9-201ENST00000476875 229 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 RNU2-12P-201ENST00000517216 168 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AC109329.2-201ENST00000519658 482 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AC079600.2-201ENST00000550076 130 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AL356280.1-201ENST00000603614 379 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 AC141273.2-201ENST00000618989 130 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.2□□□□□ -2.06
HOXD3P31249 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.2□□□□□ -2.06
HOXD3P31249 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.19□□□□□ -2.06
HOXD3P31249 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
HOXD3P31249 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD3P31249 MIR410-201ENST00000362222 80 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 Y_RNA.76-201ENST00000362931 109 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 RNA5SP125-201ENST00000364843 120 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 Y_RNA.329-201ENST00000365209 107 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 AL139095.1-201ENST00000404326 391 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 RNA5SP344-201ENST00000411081 104 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 RNU6-847P-201ENST00000411115 108 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 HMGN2P18-201ENST00000450680 270 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 SNORD109B-201ENST00000458961 67 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 SNORD109A-201ENST00000459128 67 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 CKS1BP2-201ENST00000497342 240 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 RNU6-436P-201ENST00000516171 114 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD3P31249 DEFB117-201ENST00000602356 141 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXD3P31249 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.19□□□□□ -2.06
HOXD3P31249 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD3P31249 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
HOXD3P31249 AC008264.2-201ENST00000610193 3731 ntBASIC2.19□□□□□ -2.06
HOXD3P31249 AL161431.1-201ENST00000618966 4205 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXD3P31249 Y_RNA.44-201ENST00000362676 108 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 RNU4-80P-201ENST00000363200 141 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 RNU6-324P-201ENST00000363957 106 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 RNU6-546P-201ENST00000383991 107 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 RNU6-662P-201ENST00000384253 104 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 Y_RNA.478-201ENST00000384358 107 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 MIR512-1-201ENST00000384913 84 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 MIR95-201ENST00000385072 81 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 MIR1283-1-201ENST00000408494 87 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 U3.40-201ENST00000408706 208 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 RNU2-48P-201ENST00000410694 191 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 RNA5SP508-201ENST00000411327 119 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 BMS1P22-201ENST00000414726 313 ntBASIC2.18□□□□□ -2.06
HOXD3P31249 AC063976.3-201ENST00000426849 329 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms