Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
PTPN4P29074 MIR424-201ENST00000362227 98 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-137P-201ENST00000363680 108 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 SNORD81.2-201ENST00000365153 76 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-245P-201ENST00000384020 107 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-17P-201ENST00000384245 107 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 Y_RNA.482-201ENST00000384377 111 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-18P-201ENST00000384527 107 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-601P-201ENST00000384540 107 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 MIR153-2-201ENST00000385225 87 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RPL37P10-201ENST00000412884 288 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 AP1B1P2-201ENST00000416196 106 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.58□□□□□ -2.16
PTPN4P29074 snoU13.9-201ENST00000458927 103 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 AC010531.2-201ENST00000465012 153 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-1146P-201ENST00000516282 102 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-856P-201ENST00000516959 98 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 RNU6-58P-201ENST00000517143 103 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 CBX3P8-201ENST00000532412 525 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.58□□□□□ -2.16
PTPN4P29074 AC027288.2-201ENST00000553028 243 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 MIR4303-201ENST00000581299 66 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 MIR4422-201ENST00000581938 83 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 AL353149.1-201ENST00000610667 244 ntBASIC1.58□□□□□ -2.16
PTPN4P29074 MTND5P10-201ENST00000603719 1809 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 Y_RNA.48-201ENST00000362710 103 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 Y_RNA.67-201ENST00000362870 100 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 RNU6-414P-201ENST00000363705 104 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 SNORA72.2-201ENST00000365028 127 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 Y_RNA.319-201ENST00000365138 92 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 Y_RNA.490-201ENST00000384413 102 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 RNU6-1235P-201ENST00000384559 107 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 MIR515-2-201ENST00000384883 83 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 MIR515-1-201ENST00000384884 83 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 MIR320A-201ENST00000385302 82 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 RNU6-1050P-201ENST00000410388 107 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.57□□□□□ -2.16
PTPN4P29074 RNU6-498P-201ENST00000459468 107 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 HMGN1P12-201ENST00000499125 195 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 AL590705.4-201ENST00000532209 134 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 TPTEP1-208ENST00000636884 213 ntBASIC1.57□□□□□ -2.16
PTPN4P29074 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
PTPN4P29074 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.56□□□□□ -2.16
PTPN4P29074 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
PTPN4P29074 MIR520A-201ENST00000384862 85 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 MIR586-201ENST00000385035 97 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 MTCO3P29-201ENST00000432119 779 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AC098614.3-201ENST00000438957 440 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 MTND4P17-201ENST00000470444 350 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AC116353.2-201ENST00000505332 712 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.56□□□□□ -2.16
PTPN4P29074 RNU6-344P-201ENST00000516635 111 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 RNA5SP481-201ENST00000516814 122 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 Y_RNA.708-201ENST00000516950 96 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 RRN3P3-201ENST00000549207 578 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.56□□□□□ -2.16
PTPN4P29074 SUB1P3-201ENST00000564581 315 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 SNORD53B-201ENST00000577887 78 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 MIR5701-3-201ENST00000578890 82 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 MIR5701-1-201ENST00000585138 82 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.56□□□□□ -2.16
PTPN4P29074 AC005014.2-201ENST00000607795 599 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AC009229.3-201ENST00000608056 282 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AL512598.1-201ENST00000610158 273 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 MIR5701-2-201ENST00000615634 82 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.56□□□□□ -2.16
PTPN4P29074 AC022513.1-201ENST00000624512 117 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 AC006026.1-201ENST00000444025 1803 ntBASIC1.56□□□□□ -2.16
PTPN4P29074 Y_RNA.2-201ENST00000362330 96 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 RNU6-1019P-201ENST00000364424 107 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 RNU6-338P-201ENST00000383888 105 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 Y_RNA.405-201ENST00000383979 100 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 Y_RNA.451-201ENST00000384200 100 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 SNORA67.2-201ENST00000384300 149 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 Y_RNA.524-201ENST00000384564 100 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 Y_RNA.561-201ENST00000384694 100 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 RNU4-14P-201ENST00000410858 122 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 RNA5SP247-201ENST00000411181 105 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 RN7SKP101-201ENST00000411376 320 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 MTND3P10-201ENST00000450967 341 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.55□□□□□ -2.16
PTPN4P29074 RPL7P42-201ENST00000481005 679 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 AL163540.1-201ENST00000485382 386 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 RPL36AP21-201ENST00000490372 323 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.55□□□□□ -2.16
PTPN4P29074 RNU7-175P-201ENST00000515915 61 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 SNORA31.17-201ENST00000516953 127 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 MIR5094-201ENST00000578766 85 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 AL355073.2-201ENST00000612106 557 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 AC099654.5-201ENST00000636479 350 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
PTPN4P29074 MTND4P12-201ENST00000498999 1377 ntBASIC1.55□□□□□ -2.16
PTPN4P29074 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
PTPN4P29074 RNU6-112P-201ENST00000363599 104 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 RNU6-873P-201ENST00000363833 107 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 Y_RNA.404-201ENST00000383978 102 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 RNU6-418P-201ENST00000384035 107 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 RNU6-159P-201ENST00000391080 106 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 188.4 ms