Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 U4.1-201ENST00000620349 87 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
SMARCA1P28370 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.79□□□□□ -1.96
SMARCA1P28370 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
SMARCA1P28370 SNORD87-201ENST00000364849 89 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 Y_RNA.376-201ENST00000365638 108 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 Y_RNA.396-201ENST00000383949 103 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 MT-TW-201ENST00000387382 68 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.79□□□□□ -1.96
SMARCA1P28370 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.79□□□□□ -1.96
SMARCA1P28370 AC005002.2-201ENST00000438228 269 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.79□□□□□ -1.96
SMARCA1P28370 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.79□□□□□ -1.96
SMARCA1P28370 UQCRBP2-201ENST00000447827 297 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 RPS23P5-201ENST00000495419 428 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.79□□□□□ -1.96
SMARCA1P28370 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.79□□□□□ -1.96
SMARCA1P28370 RNU6-1143P-201ENST00000516125 104 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 RNU6-965P-201ENST00000516721 96 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 SNORA48.11-201ENST00000517015 89 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 CYCSP23-201ENST00000519781 313 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 AP003733.2-201ENST00000529409 171 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 MIR4435-1-201ENST00000582552 80 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 MIR4658-201ENST00000584344 65 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 RPL17P51-201ENST00000605218 238 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 LINC02555-201ENST00000563933 1951 ntBASIC2.79□□□□□ -1.96
SMARCA1P28370 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SMARCA1P28370 RNU6-20P-201ENST00000384106 107 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 RNU6-472P-201ENST00000384299 107 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 RNU6-505P-201ENST00000384427 107 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 MIR215-201ENST00000384858 110 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 MIR524-201ENST00000385242 87 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 MIR1302-3-201ENST00000408128 138 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 RN7SL636P-201ENST00000497504 294 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 AC026436.1-201ENST00000510537 270 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 AC074133.1-201ENST00000515696 183 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 RNA5SP24-201ENST00000516478 95 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.78□□□□□ -1.96
SMARCA1P28370 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.78□□□□□ -1.96
SMARCA1P28370 MIR4423-201ENST00000580922 80 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.78□□□□□ -1.96
SMARCA1P28370 MIR376A1-201ENST00000616574 68 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 MIR1248-201ENST00000629190 106 ntBASIC2.78□□□□□ -1.96
SMARCA1P28370 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
SMARCA1P28370 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
SMARCA1P28370 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
SMARCA1P28370 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.77□□□□□ -1.97
SMARCA1P28370 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.77□□□□□ -1.97
SMARCA1P28370 snoU2_19.2-201ENST00000363024 80 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 SNORD63-201ENST00000384262 68 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 Y_RNA.498-201ENST00000384460 102 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU6-713P-201ENST00000384761 107 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 MIR561-201ENST00000385216 97 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU2-32P-201ENST00000411193 191 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 CR769767.1-201ENST00000436337 346 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU6-625P-201ENST00000459412 107 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU5F-4P-201ENST00000516581 114 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU1-117P-201ENST00000517041 158 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.77□□□□□ -1.97
SMARCA1P28370 AP002001.1-203ENST00000534002 267 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 MIR5007-201ENST00000583098 95 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 SNORD11B-201ENST00000607707 90 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 AC013412.1-201ENST00000610687 192 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 AC068205.3-201ENST00000636385 468 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.77□□□□□ -1.97
SMARCA1P28370 ZNF271P-202ENST00000465539 1970 ntBASIC2.77□□□□□ -1.97
SMARCA1P28370 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
SMARCA1P28370 RNU6-545P-201ENST00000362681 104 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 RNA5SP126-201ENST00000365092 109 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 RNU6-234P-201ENST00000365229 104 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 Y_RNA.462-201ENST00000384268 102 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 Y_RNA.483-201ENST00000384380 101 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 AC234781.5-201ENST00000508429 271 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 ATP5EP1-201ENST00000510257 156 ntBASIC2.76□□□□□ -1.97
SMARCA1P28370 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.76□□□□□ -1.97
SMARCA1P28370 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.76□□□□□ -1.97
SMARCA1P28370 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.76□□□□□ -1.97
SMARCA1P28370 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.76□□□□□ -1.97
SMARCA1P28370 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SMARCA1P28370 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
SMARCA1P28370 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SMARCA1P28370 MIR6073-201ENST00000352083 89 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 RNU6-546P-201ENST00000383991 107 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 Y_RNA.461-201ENST00000384263 103 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 RNU6-102P-201ENST00000384485 104 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 RNU2-48P-201ENST00000410694 191 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 RAB28P5-201ENST00000427490 651 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 RNU7-14P-201ENST00000459331 62 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.75□□□□□ -1.97
SMARCA1P28370 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.75□□□□□ -1.97
SMARCA1P28370 Y_RNA.668-201ENST00000516233 93 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 RNU6-570P-201ENST00000517051 105 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.75□□□□□ -1.97
SMARCA1P28370 AC004817.2-201ENST00000561794 651 ntBASIC2.75□□□□□ -1.97
SMARCA1P28370 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.75□□□□□ -1.97
SMARCA1P28370 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SMARCA1P28370 Y_RNA.84-201ENST00000363011 104 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms