Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS4BO75351 VTRNA1-1-201ENST00000363120 99 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 Y_RNA.286-201ENST00000364813 102 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 Y_RNA.478-201ENST00000384358 107 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 Y_RNA.489-201ENST00000384410 101 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 MIR586-201ENST00000385035 97 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 MIR504-201ENST00000385065 83 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 RNU6-220P-201ENST00000390919 107 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 SNORD58.1-201ENST00000391313 66 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 Y_RNA.602-201ENST00000410535 92 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 RNU6-1199P-201ENST00000411249 104 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 HMGN2P35-201ENST00000412164 270 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS4BO75351 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS4BO75351 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 MIR3674-201ENST00000636576 68 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 MTND5P6-201ENST00000422338 1798 ntBASIC2.68□□□□□ -1.98
VPS4BO75351 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
VPS4BO75351 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
VPS4BO75351 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS4BO75351 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS4BO75351 Y_RNA.16-201ENST00000362421 102 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 Y_RNA.101-201ENST00000363154 102 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 U3.8-201ENST00000363675 217 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
VPS4BO75351 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
VPS4BO75351 RNU4-30P-201ENST00000410245 143 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 AC003685.2-201ENST00000422795 395 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS4BO75351 AL161788.1-201ENST00000441805 169 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 SNORD109B-201ENST00000458961 67 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 SNORD109A-201ENST00000459128 67 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 HMGB3P17-201ENST00000504195 649 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 AC008413.1-201ENST00000511864 177 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 SNORA48.11-201ENST00000517015 89 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 DEFB108E-201ENST00000524692 240 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
VPS4BO75351 MIR3128-201ENST00000581957 66 ntBASIC2.67□□□□□ -1.98
VPS4BO75351 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
VPS4BO75351 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
VPS4BO75351 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
VPS4BO75351 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS4BO75351 Y_RNA.20-201ENST00000362479 113 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 SNORD87-201ENST00000364849 89 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RNU6-1180P-201ENST00000364935 107 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RNU6-234P-201ENST00000365229 104 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RNU6-326P-201ENST00000365480 107 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RNU6-847P-201ENST00000411115 108 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RPL23AP36-201ENST00000413895 458 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 CYP2C59P-201ENST00000457790 269 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 Y_RNA.638-201ENST00000459374 113 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 AC107222.1-201ENST00000510899 637 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 SERF1AP1-201ENST00000514575 187 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RNU6-966P-201ENST00000516479 104 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RNU7-110P-201ENST00000516891 62 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 RN7SKP40-201ENST00000517211 242 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 AC109329.2-201ENST00000519658 482 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS4BO75351 MIR4524B-201ENST00000581569 115 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS4BO75351 AC004467.1-201ENST00000615678 330 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 AL590808.1-201ENST00000618696 141 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.66□□□□□ -1.98
VPS4BO75351 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
VPS4BO75351 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.65□□□□□ -1.98
VPS4BO75351 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 Y_RNA.136-201ENST00000363444 102 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 RNU6-1318P-201ENST00000365389 103 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 Y_RNA.352-201ENST00000365439 102 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 Y_RNA.416-201ENST00000384014 113 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 Y_RNA.446-201ENST00000384178 104 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 RNU6-21P-201ENST00000384710 107 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 MIR300-201ENST00000401138 83 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 MIR548H3-201ENST00000408771 118 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 RNU2-54P-201ENST00000410299 190 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 RNU2-48P-201ENST00000410694 191 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.65□□□□□ -1.99
VPS4BO75351 AC092427.1-202ENST00000430569 476 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 TOMM22P2-201ENST00000430735 237 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 AC005042.3-201ENST00000453230 174 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS4BO75351 RNU5F-4P-201ENST00000516581 114 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 RNU2-12P-201ENST00000517216 168 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 AL109918.3-201ENST00000603072 338 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS4BO75351 AC091932.3-201ENST00000624223 323 ntBASIC2.65□□□□□ -1.99
VPS4BO75351 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.65□□□□□ -1.99
VPS4BO75351 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
VPS4BO75351 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VPS4BO75351 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS4BO75351 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS4BO75351 RNU6-454P-201ENST00000364292 107 ntBASIC2.64□□□□□ -1.99
VPS4BO75351 RNA5SP240-201ENST00000365355 128 ntBASIC2.64□□□□□ -1.99
VPS4BO75351 RNU2-52P-201ENST00000410680 190 ntBASIC2.64□□□□□ -1.99
VPS4BO75351 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS4BO75351 AC009963.1-201ENST00000417265 157 ntBASIC2.64□□□□□ -1.99
VPS4BO75351 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS4BO75351 AL513328.1-201ENST00000446460 224 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 222.8 ms