Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 ELL2P1-201ENST00000413990 1906 ntBASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 KRT18P2-201ENST00000447938 1258 ntBASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 CEND1P1-201ENST00000451006 455 ntBASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.17■□□□□ 0.66
COL25A1Q9BXS0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 AL023284.2-201ENST00000405850 579 ntBASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL25A1Q9BXS0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 PMS2P4-201ENST00000412466 1052 ntBASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 TERF1P3-201ENST00000505638 1227 ntBASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL25A1Q9BXS0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL25A1Q9BXS0 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.14■□□□□ 0.66
COL25A1Q9BXS0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL25A1Q9BXS0 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 MKNK2P1-201ENST00000437526 628 ntBASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 AC025062.2-201ENST00000605477 670 ntBASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 AL078644.1-201ENST00000609881 752 ntBASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 AL513190.1-201ENST00000621254 727 ntBASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 AC002310.6-201ENST00000624451 1377 ntBASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL25A1Q9BXS0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms