Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 KRT8P3-201ENST00000519669 1449 ntBASIC14.66□□□□□ -0.06
CCDC140Q96MF4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 AC093525.10-201ENST00000625130 1569 ntBASIC14.65□□□□□ -0.06
CCDC140Q96MF4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 RBM17P1-201ENST00000453646 1190 ntBASIC14.65□□□□□ -0.06
CCDC140Q96MF4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
CCDC140Q96MF4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 AL512353.2-201ENST00000448759 1962 ntBASIC14.64□□□□□ -0.07
CCDC140Q96MF4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 AC093827.2-201ENST00000512654 315 ntBASIC14.64□□□□□ -0.07
CCDC140Q96MF4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC140Q96MF4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AL031598.1-201ENST00000561511 1773 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 UNC93B2-201ENST00000285383 730 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 CRYGFP-201ENST00000418459 633 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AL355075.4-201ENST00000554988 638 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 MIR4497-201ENST00000583208 89 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms