Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 AL445675.2-201ENST00000620291 557 ntBASIC18.12■□□□□ 0.49
VMP1Q96GC9 LTB4R2-202ENST00000528054 3092 ntBASIC18.12■□□□□ 0.49
VMP1Q96GC9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 AL355355.2-201ENST00000442321 338 ntBASIC18.11■□□□□ 0.49
VMP1Q96GC9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 AC026471.5-201ENST00000615068 467 ntBASIC18.11■□□□□ 0.49
VMP1Q96GC9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 CR392000.1-201ENST00000624770 1228 ntBASIC18.11■□□□□ 0.49
VMP1Q96GC9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VMP1Q96GC9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VMP1Q96GC9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 AC090340.1-201ENST00000620778 4980 ntBASIC18.1■□□□□ 0.49
VMP1Q96GC9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.1■□□□□ 0.49
VMP1Q96GC9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VMP1Q96GC9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VMP1Q96GC9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms